Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IV493_RS15145 Genome accession   NZ_CP064872
Coordinates   3246797..3248179 (-) Length   460 a.a.
NCBI ID   WP_003854897.1    Uniprot ID   A0A1I5CYX4
Organism   Pantoea sp. SM3640     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3241797..3253179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IV493_RS15130 (IV493_15130) - 3243354..3244250 (-) 897 WP_013356690.1 LysR family transcriptional regulator -
  IV493_RS15135 (IV493_15135) - 3244437..3245438 (+) 1002 WP_095706235.1 zinc-binding alcohol dehydrogenase family protein -
  IV493_RS15140 (IV493_15140) nadR 3245484..3246725 (-) 1242 WP_013356688.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  IV493_RS15145 (IV493_15145) radA 3246797..3248179 (-) 1383 WP_003854897.1 DNA repair protein RadA Machinery gene
  IV493_RS15150 (IV493_15150) serB 3248193..3249170 (-) 978 WP_095706237.1 phosphoserine phosphatase -
  IV493_RS15155 (IV493_15155) - 3249278..3249928 (+) 651 WP_095706238.1 YtjB family periplasmic protein -
  IV493_RS15160 (IV493_15160) yjjG 3250254..3250934 (-) 681 WP_095706239.1 pyrimidine 5'-nucleotidase -
  IV493_RS15165 (IV493_15165) rimI 3250953..3251393 (-) 441 WP_195857379.1 ribosomal protein S18-alanine N-acetyltransferase -
  IV493_RS15170 (IV493_15170) - 3251365..3251775 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -
  IV493_RS15175 (IV493_15175) rsmC 3251882..3252913 (+) 1032 WP_033731428.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49323.93 Da        Isoelectric Point: 7.4220

>NTDB_id=505512 IV493_RS15145 WP_003854897.1 3246797..3248179(-) (radA) [Pantoea sp. SM3640]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEVTSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=505512 IV493_RS15145 WP_003854897.1 3246797..3248179(-) (radA) [Pantoea sp. SM3640]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAATGAATGCGGCGCAGATTACCCACGCTGGCAGGGGCAATGCAGCGC
CTGCCACGCCTGGAACACCATCACCGAGGTGCGCATCGCCGCCTCGCCCGCCGCTGCGCGTAACGAGCGCCTGAGTGGTT
ATGCCGGCAGCGCGGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGCGTCGTACCGGGCAGCGCTATTCTGATTGGCGGCAGTCCGGGCGCGGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAAGGGATGAAAACCCTGTACGTCACCGGTGAAGAGTCAC
TGCAACAGGTGGCGATGCGCGCTCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAGCAGGAGCAACCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCGGGCAGCGTGGCTCAGGTGCGGGAAACCGCTGCTTACCTGACGCGCTTCGCCAAAACGCGCGGCGTGG
CGATCATCATGGTCGGCCACGTCACCAAAGATGGCTCGCTGGCCGGGCCGAAGGTGCTGGAGCACTGCATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTTCGCACGCTGCGCAGCCATAAAAACCGCTTCGGCGCGGTGAATGAGCT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAATCCATCCGCTATCTTCCTGTCGCGTGGCGAAGAGG
TCACCTCGGGCAGTTCGGTCATGGTGCTGTGGGAGGGAACGCGTCCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCAATGATGGGCAATCCGCGCCGCGTGGCGGTGGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTCGCCGTTTTACACCG
CCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTTAACGTGGTTGGTGGCGTTAAAGTCACCGAAACCAGTGCGG
ATCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCACTGCCACAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCCGGTGAGATCCGTCCAGTGCCCAGCGGTCAGGAGCGCATCTCTGAAGCAGCGAAGCATGGCTTCAAACGCGC
CATTGTACCGGCGGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I5CYX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424