Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SII_RS08295 Genome accession   NC_022237
Coordinates   1721270..1723246 (-) Length   658 a.a.
NCBI ID   WP_020999185.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1716270..1728246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS08275 (SII_1631) eeP 1716808..1718079 (-) 1272 WP_020999183.1 M50 family metallopeptidase Regulator
  SII_RS08280 (SII_1632) - 1718231..1719034 (-) 804 WP_020999184.1 phosphatidate cytidylyltransferase -
  SII_RS08285 (SII_1633) - 1719043..1719792 (-) 750 WP_003074042.1 isoprenyl transferase -
  SII_RS08290 (SII_1634) yajC 1720256..1720594 (-) 339 WP_003074039.1 preprotein translocase subunit YajC -
  SII_RS08295 (SII_1635) recP/tkt 1721270..1723246 (-) 1977 WP_020999185.1 transketolase Machinery gene
  SII_RS08300 (SII_1636) ulaG 1723387..1724478 (-) 1092 WP_003074034.1 L-ascorbate 6-phosphate lactonase -
  SII_RS08305 (SII_1637) - 1724640..1726310 (-) 1671 WP_020999186.1 BglG family transcription antiterminator -
  SII_RS08310 (SII_1638) - 1726514..1727221 (-) 708 WP_003074030.1 L-ribulose-5-phosphate 4-epimerase -
  SII_RS08315 (SII_1639) - 1727224..1728087 (-) 864 WP_020999187.1 L-ribulose-5-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71370.46 Da        Isoelectric Point: 4.8392

>NTDB_id=50551 SII_RS08295 WP_020999185.1 1721270..1723246(-) (recP/tkt) [Streptococcus intermedius C270]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQMRINPEVPNWINRDRFVLSAGHGSMLLYALLHLSGFQD
VTMEELKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISMATGFAQAERFLAAKYNREGYNIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLDKLIVLYDSNDINLDGETKDSFTESVRARYDAYGWHTDLVKDGTDLEAINAAIEAAKVSGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGAEEVAATRKALTWDYEPFEIPEEVYEDYRVNVAERGKAAYDAWVKLVEAYKQAYPD
LADEVAAVIAGQDPVEIKPEDFPVVETGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAIRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLNVLRPADARETQAAWYLALKSQTTPTALVLTRQNLTVEAGTDFDKVAKGAYVVYETANGFDTILLASGSEVNLAV
AAAKELEAKGEKIRVVSVPSTDIFDEQDAAYKEEILPNAVRRRVAIEMAASQSWYKYVGLDGAVIGIDKFGASAPAAKVL
KEYGFTVDHIAEVVKNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=50551 SII_RS08295 WP_020999185.1 1721270..1723246(-) (recP/tkt) [Streptococcus intermedius C270]
ATGTCAAATTTATCTGTCAATGCCATTCGTTTTTTAGGAATTGATGCCATTGAAAAATCAAAATCTGGTCACCCAGGTGT
TGTCATGGGAGCAGCTCCGATGGCTTATGACTTGTTTACCAAGCAAATGCGCATCAATCCAGAAGTTCCAAATTGGATCA
ATCGCGATCGGTTTGTTTTATCAGCTGGTCATGGCTCTATGTTACTCTATGCCCTTCTCCATTTGTCTGGTTTTCAAGAT
GTTACAATGGAAGAACTCAAGAACTTCCGTCAATGGGGTTCTAAAACGCCTGGGCATCCCGAATTTGGACATACTGCTGG
TGTAGATGCGACAACTGGGCCACTTGGTCAAGGAATTTCTATGGCAACTGGTTTTGCACAAGCAGAACGTTTTTTAGCAG
CAAAATACAATCGTGAAGGCTATAATATCTTTGACCACTATACGTATGTAATCTGTGGTGATGGAGACTTGATGGAAGGT
GTATCTGCTGAAGCAGCTTCTTATGCTGGACTCCAAAAGCTAGACAAGCTCATCGTTCTCTATGACTCCAACGATATTAA
TCTGGATGGAGAAACCAAGGATTCCTTTACAGAAAGTGTTCGGGCGCGTTATGATGCTTATGGTTGGCACACAGATTTGG
TCAAAGATGGCACAGACTTAGAAGCGATCAATGCAGCGATTGAGGCTGCAAAAGTTTCTGGCAAACCGTCCTTAATTGAA
GTGAAAACAGTGATTGGTTATGGTTCACCAAACAAACAAGGGACTAATGCCGTTCATGGAGCTCCTCTTGGTGCAGAAGA
AGTAGCCGCTACTCGTAAAGCTCTTACTTGGGATTACGAACCGTTTGAAATTCCTGAAGAAGTCTACGAAGATTATCGGG
TCAATGTTGCCGAACGTGGGAAAGCTGCTTATGATGCTTGGGTAAAACTTGTTGAAGCATACAAACAAGCCTATCCTGAC
TTAGCTGATGAAGTAGCTGCTGTTATTGCGGGACAAGATCCAGTTGAGATCAAGCCAGAAGATTTCCCAGTAGTAGAAAC
AGGTTTCTCACAAGCTACTCGTAATTCTAGCCAAGATGCTTTAAATGCGGCAGCAAAAGTACTTCCAACATTCCTTGGTG
GCTCTGCTGATCTAGCTCATTCTAATATGACTTATATCAAAGAAGATGGCTTGCAAGATGATGCCCACCGCCTTAACCGC
AACATTCAATTCGGTGTACGTGAATTTGCTATGGGAACGATTCTGAATGGTATGGCACTTCACGGGGGACTTCGTGTTTA
TGGTGGTACATTCTTTGTGTTCTCAGATTATGTCAAAGCGGCTATTCGTTTATCAGCTCTTCAAGGCTTGCCTGTAACCT
ATGTCTTTACACATGATTCAATTGCAGTTGGTGAGGATGGTCCAACTCATGAACCGATTGAGCACTTAGCAGGTCTTCGT
GCAATTCCAAACCTCAATGTCTTGCGCCCAGCAGATGCACGTGAAACACAGGCGGCTTGGTACTTGGCGCTGAAGAGTCA
AACAACTCCAACAGCTTTGGTTCTCACACGTCAAAACTTGACAGTTGAAGCTGGAACTGACTTTGACAAGGTGGCGAAAG
GAGCTTATGTTGTATATGAAACAGCAAATGGTTTTGATACAATTCTTCTGGCATCTGGTTCTGAAGTCAACTTAGCTGTA
GCGGCTGCAAAAGAGTTGGAGGCTAAAGGAGAAAAGATTCGTGTTGTCAGCGTACCATCAACAGATATCTTTGATGAACA
AGATGCTGCCTACAAAGAAGAAATTTTACCAAATGCAGTCCGCCGCCGTGTCGCGATTGAAATGGCTGCAAGTCAGTCTT
GGTACAAATATGTTGGACTTGATGGAGCTGTGATTGGTATTGACAAATTTGGCGCTTCTGCCCCAGCTGCTAAAGTGCTT
AAAGAATATGGTTTCACCGTTGATCATATCGCAGAAGTTGTGAAAAACTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)

Transketolase, C-terminal domain (Transketolase_C)

(543-650)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

79.148

99.848

0.79

Multiple sequence alignment