Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPPC18_RS00095 Genome accession   NC_017742
Coordinates   14199..14462 (+) Length   87 a.a.
NCBI ID   WP_000584948.1    Uniprot ID   A0AB72ZTB6
Organism   Helicobacter pylori PeCan18     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9199..19462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC18_RS00070 (HPPC18_00045) groES 9482..9838 (-) 357 WP_000671927.1 co-chaperone GroES -
  HPPC18_RS00075 (HPPC18_00050) dnaG 10125..11804 (+) 1680 WP_000601594.1 DNA primase -
  HPPC18_RS00080 (HPPC18_00055) - 11801..12853 (+) 1053 WP_000809435.1 MnmA/TRMU family protein -
  HPPC18_RS00085 (HPPC18_00060) - 12945..13772 (+) 828 WP_001154951.1 DUF5718 family protein -
  HPPC18_RS00090 (HPPC18_00065) comB2 13918..14199 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPPC18_RS00095 (HPPC18_00070) comB3 14199..14462 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  HPPC18_RS00100 (HPPC18_00075) comB4 14464..16827 (+) 2364 WP_000890489.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPPC18_RS00105 (HPPC18_00080) - 17132..18472 (+) 1341 WP_001876830.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9992.05 Da        Isoelectric Point: 9.5290

>NTDB_id=50550 HPPC18_RS00095 WP_000584948.1 14199..14462(+) (comB3) [Helicobacter pylori PeCan18]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=50550 HPPC18_RS00095 WP_000584948.1 14199..14462(+) (comB3) [Helicobacter pylori PeCan18]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTAGAATTTTTTGATGAAGACATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment