Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IYN96_RS06470 Genome accession   NZ_CP064871
Coordinates   1424425..1424826 (+) Length   133 a.a.
NCBI ID   WP_024711139.1    Uniprot ID   A0A855JH23
Organism   Xanthomonas oryzae pv. oryzicola strain YN01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419425..1429826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IYN96_RS06450 (IYN96_06440) tsaB 1420443..1421162 (+) 720 WP_014504137.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  IYN96_RS06455 (IYN96_06445) - 1421125..1422074 (+) 950 Protein_1229 ADP-ribosylglycohydrolase family protein -
  IYN96_RS06460 (IYN96_06450) - 1422365..1423240 (-) 876 WP_047340053.1 energy transducer TonB -
  IYN96_RS06465 (IYN96_06455) gshB 1423237..1424187 (-) 951 WP_014504134.1 glutathione synthase -
  IYN96_RS06470 (IYN96_06460) pilG 1424425..1424826 (+) 402 WP_024711139.1 twitching motility response regulator PilG Regulator
  IYN96_RS06475 (IYN96_06465) - 1424844..1425206 (+) 363 WP_014504132.1 response regulator -
  IYN96_RS06480 (IYN96_06470) - 1425206..1425736 (+) 531 WP_003482487.1 chemotaxis protein CheW -
  IYN96_RS06485 (IYN96_06475) - 1425776..1427812 (+) 2037 WP_014504131.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 6.9539

>NTDB_id=505491 IYN96_RS06470 WP_024711139.1 1424425..1424826(+) (pilG) [Xanthomonas oryzae pv. oryzicola strain YN01]
MTENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=505491 IYN96_RS06470 WP_024711139.1 1424425..1424826(+) (pilG) [Xanthomonas oryzae pv. oryzicola strain YN01]
ATGACTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTTGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTAATCATGTTGTCGTCCAAGGATGGGCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTATTGAGCGCAATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855JH23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684