Detailed information NTG0505480

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: IYN96_RS01945
• Genome accession: NZ_CP064871
• Coordinates: 424524..426044 (-)
• Length: 506 a.a.
• NCBI ID: WP_047340240.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzicola strain YN01
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 419524..431044

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IYN96_RS01920 (IYN96_01910)	-	420090..421211 (+)	1122	WP_014504996.1	acyl-CoA desaturase	-
IYN96_RS01925 (IYN96_01915)	-	421277..422827 (-)	1551	WP_047340242.1	EAL domain-containing protein	-
IYN96_RS01930 (IYN96_01920)	-	423210..423386 (+)	177	WP_010374782.1	hypothetical protein	-
IYN96_RS01935 (IYN96_01925)	-	423540..424049 (-)	510	WP_047340241.1	lipocalin family protein	-
IYN96_RS01945 (IYN96_01935)	comM	424524..426044 (-)	1521	WP_047340240.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
IYN96_RS01950 (IYN96_01940)	-	426061..426339 (-)	279	WP_014504991.1	accessory factor UbiK family protein	-
IYN96_RS01955 (IYN96_01945)	-	426493..426867 (+)	375	WP_014504990.1	P-II family nitrogen regulator	-
IYN96_RS01960 (IYN96_01950)	-	427481..429466 (+)	1986	WP_024712424.1	beta-N-acetylglucosaminidase domain-containing protein	-
IYN96_RS01970 (IYN96_01960)	-	429729..429965 (-)	237	Protein_376	hypothetical protein	-
IYN96_RS01975 (IYN96_01965)	-	430070..430339 (-)	270	Protein_377	hypothetical protein	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 54039.88 Da
• Isoelectric Point: 8.6054

>NTDB_id=505480 IYN96_RS01945 WP_047340240.1 424524..426044(-) (comM) [Xanthomonas oryzae pv. oryzicola strain YN01]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVKALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLNLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVTARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide

• Length: 1521 bp

>NTDB_id=505480 IYN96_RS01945 WP_047340240.1 424524..426044(-) (comM) [Xanthomonas oryzae pv. oryzicola strain YN01]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCAGCCGAATTGGCGGTGAAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGAATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTGGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TTTCCGGCCCCTTGCTGGACCGCATAGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCACCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAACGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	56.917	100	0.569
comM	Haemophilus influenzae Rd KW20	55.382	100	0.559
comM	Vibrio campbellii strain DS40M4	54.545	100	0.545
comM	Glaesserella parasuis strain SC1401	54.545	100	0.545
comM	Legionella pneumophila str. Paris	51.911	98.221	0.51
comM	Legionella pneumophila strain ERS1305867	51.911	98.221	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.957	100	0.46