NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	IZU89_RS05485	Genome accession	NZ_CP064870
Coordinates	1210117..1211478 (+)	Length	453 a.a.
NCBI ID	WP_349664467.1	Uniprot ID	-
Organism	Cellulophaga lytica strain FXS1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1205117..1216478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IZU89_RS05460 (IZU89_05420)	-	1205770..1206579 (-)	810	WP_013620627.1	glycogen/starch synthase	-
IZU89_RS05465 (IZU89_05425)	panC	1206685..1207530 (+)	846	WP_034645534.1	pantoate--beta-alanine ligase	-
IZU89_RS05470 (IZU89_05430)	panD	1207544..1207894 (+)	351	WP_013620629.1	aspartate 1-decarboxylase	-
IZU89_RS05475 (IZU89_05435)	-	1207900..1208865 (+)	966	WP_349664463.1	lysylphosphatidylglycerol synthase transmembrane domain-containing protein	-
IZU89_RS05480 (IZU89_05440)	-	1208894..1210027 (+)	1134	WP_349664465.1	alpha/beta hydrolase-fold protein	-
IZU89_RS05485 (IZU89_05445)	radA	1210117..1211478 (+)	1362	WP_349664467.1	DNA repair protein RadA	Machinery gene
IZU89_RS05490 (IZU89_05450)	-	1211549..1212589 (-)	1041	WP_038507299.1	aldo/keto reductase	-
IZU89_RS05495 (IZU89_05455)	-	1212755..1213237 (-)	483	WP_013620634.1	cytochrome c	-
IZU89_RS05500 (IZU89_05460)	-	1213279..1214241 (-)	963	WP_034645549.1	alpha/beta fold hydrolase	-
IZU89_RS05505 (IZU89_05465)	-	1214246..1215220 (-)	975	WP_013620636.1	nitronate monooxygenase	-
IZU89_RS05510 (IZU89_05470)	-	1215353..1215832 (+)	480	WP_013620637.1	thioesterase family protein	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 49632.37 Da Isoelectric Point: 7.8833

                                >NTDB_id=505472 IZU89_RS05485 WP_349664467.1 1210117..1211478(+) (radA) [Cellulophaga lytica strain FXS1]

MAKTKTAFFCQNCGTQYAKWAGQCGACKEWNTIVEEVIQKEEKSSWKTPSNTPKIATKPLRVKEISTEKELRLNTYDLEF

NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRADRITTNNDTCFILTETKTQNIFKQV

EAIEPDILVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD

RNYVYRILRALKNRFGSTAELGIYEMLGSGLREVNNPSEILISKNDEGLSGTAISASIEGMRPLMIEIQALVSTAVYGTP

QRSTTGFNAKRLNMLLAVLEKRAGFMLGAKDVFLNITGGISVDDPAIDLAVIAAILSSNSDIAIPKGVCFAAEVGLAGEI

RPIQRVDQRISEAEKLGFTAIFVSKNNKITLKNTVIKVHLVSKIEDVVRSLFN

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=505472 IZU89_RS05485 WP_349664467.1 1210117..1211478(+) (radA) [Cellulophaga lytica strain FXS1]

ATGGCTAAAACAAAAACAGCTTTTTTTTGTCAAAATTGTGGCACACAATATGCTAAATGGGCGGGACAATGTGGCGCTTG

TAAAGAGTGGAACACTATTGTTGAAGAAGTTATACAAAAAGAAGAAAAAAGCAGTTGGAAAACACCTAGTAACACCCCTA

AAATTGCAACTAAACCTTTACGTGTTAAAGAAATTAGTACAGAAAAAGAATTACGCCTAAACACCTATGACCTTGAGTTT

AACAGGGTTTTAGGTGGCGGCTTGGTTCCTGGCTCATTAACACTTTTGGGGGGAGAGCCCGGAATAGGAAAAAGTACACT

ATTACTACAAATTTCACTTAAATTACCTTATAAAACATTATATGTATCTGGAGAAGAAAGTCAGAAACAAATAAAAATGA

GGGCAGACCGTATTACCACAAATAATGATACGTGTTTTATACTTACAGAAACCAAAACACAAAATATTTTTAAACAGGTT

GAAGCTATAGAACCAGATATTTTAGTTATAGATTCTATACAAACACTCCACTCAGACTACATAGAGTCTGCCGCAGGTAG

CATATCACAGATTAGAGAATGTACTGCAGAACTTATAAAGTTTGCAAAAGAAACAAATACTCCCGTTATTTTAATTGGTC

ATATTACAAAAGATGGCACTATAGCCGGACCAAAAATTTTAGAACACATGGTAGATACTGTTTTACAATTTGAGGGGGAC

CGAAATTATGTATACAGAATTTTACGTGCATTAAAAAACAGGTTTGGCTCTACAGCAGAATTAGGAATTTATGAGATGTT

GGGTAGCGGTTTACGCGAAGTAAACAATCCTTCAGAGATTTTAATTTCTAAAAATGACGAAGGCCTAAGCGGAACAGCTA

TTTCTGCCTCTATAGAAGGTATGCGCCCTTTAATGATAGAAATACAAGCCCTTGTTAGTACTGCTGTGTACGGAACACCA

CAAAGGTCTACAACAGGTTTTAATGCAAAAAGACTTAACATGTTATTAGCCGTTTTAGAAAAACGTGCTGGTTTTATGCT

TGGTGCAAAAGATGTCTTCTTAAATATAACTGGAGGTATTTCTGTAGATGACCCTGCTATTGACCTAGCTGTAATTGCAG

CAATTTTGTCTAGCAACTCAGACATTGCAATTCCTAAAGGTGTATGTTTTGCCGCTGAAGTTGGTTTAGCAGGAGAAATT

AGGCCCATACAACGCGTAGACCAACGTATATCCGAGGCAGAAAAACTTGGATTTACAGCCATATTTGTATCCAAAAACAA

TAAAATCACCTTAAAAAATACAGTTATAAAAGTACACTTGGTCTCAAAAATTGAAGATGTAGTAAGAAGTTTGTTTAATT

AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(83-219)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Streptococcus pneumoniae R6	49.123	100	0.494
radA	Streptococcus pneumoniae Rx1	49.123	100	0.494
radA	Streptococcus pneumoniae D39	49.123	100	0.494
radA	Streptococcus pneumoniae TIGR4	49.123	100	0.494
radA	Streptococcus mitis NCTC 12261	48.571	100	0.488
radA	Streptococcus mitis SK321	48.571	100	0.488
radA	Bacillus subtilis subsp. subtilis str. 168	50.465	94.923	0.479

Detailed information NTG0505472