Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IYN86_RS12330 Genome accession   NZ_CP064868
Coordinates   2444796..2445767 (-) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain 82104     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2439796..2450767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IYN86_RS12305 - 2440351..2440872 (+) 522 WP_058591620.1 GrpB family protein -
  IYN86_RS12310 murB 2440942..2441859 (+) 918 WP_058612029.1 UDP-N-acetylmuramate dehydrogenase -
  IYN86_RS12315 - 2441904..2442941 (-) 1038 WP_058612030.1 ABC transporter substrate-binding protein -
  IYN86_RS12320 - 2443044..2443844 (-) 801 WP_058591622.1 ATP-binding cassette domain-containing protein -
  IYN86_RS12325 - 2443841..2444806 (-) 966 WP_065380990.1 iron chelate uptake ABC transporter family permease subunit -
  IYN86_RS12330 ceuB 2444796..2445767 (-) 972 WP_025905417.1 ABC transporter permease Machinery gene
  IYN86_RS12335 - 2445894..2446310 (-) 417 WP_196968047.1 FixH family protein -
  IYN86_RS12340 nrdF 2446460..2447431 (-) 972 WP_048539937.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  IYN86_RS12345 nrdE 2447460..2449565 (-) 2106 WP_058612033.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  IYN86_RS12350 nrdI 2449528..2449926 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=505465 IYN86_RS12330 WP_025905417.1 2444796..2445767(-) (ceuB) [Mammaliicoccus sciuri strain 82104]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=505465 IYN86_RS12330 WP_025905417.1 2444796..2445767(-) (ceuB) [Mammaliicoccus sciuri strain 82104]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCAAGAA
CAGTCAGTATTATTATCTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCATCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATTATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCGCATACAGCTGTATTTGGTGCATTGTTTGTTATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502