Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   IYN86_RS00290 Genome accession   NZ_CP064868
Coordinates   59648..61279 (-) Length   543 a.a.
NCBI ID   WP_107378649.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain 82104     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 52954..61279 59648..61279 within 0


Gene organization within MGE regions


Location: 52954..61279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IYN86_RS00245 - 52963..53112 (+) 150 WP_248559291.1 abortive infection family protein -
  IYN86_RS00250 - 53304..53711 (+) 408 WP_248559292.1 hypothetical protein -
  IYN86_RS15590 - 53844..53969 (+) 126 WP_282579069.1 hypothetical protein -
  IYN86_RS00255 - 54661..55722 (+) 1062 WP_248559293.1 DNA methyltransferase -
  IYN86_RS00260 - 55680..56690 (+) 1011 WP_248559294.1 TaqI-like C-terminal specificity domain-containing protein -
  IYN86_RS00265 - 56687..56908 (+) 222 WP_248559295.1 hypothetical protein -
  IYN86_RS00270 - 57028..57717 (-) 690 WP_107378646.1 replication initiation protein -
  IYN86_RS00275 - 57918..58421 (-) 504 WP_107378647.1 DUF1643 domain-containing protein -
  IYN86_RS00280 - 58442..58753 (-) 312 WP_107378648.1 DUF960 family protein -
  IYN86_RS00285 - 58838..59187 (-) 350 Protein_55 SAUGI family uracil-DNA glycosylase inhibitor -
  IYN86_RS00290 ccrB 59648..61279 (-) 1632 WP_107378649.1 recombinase family protein Machinery gene

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 62431.43 Da        Isoelectric Point: 9.7233

>NTDB_id=505439 IYN86_RS00290 WP_107378649.1 59648..61279(-) (ccrB) [Mammaliicoccus sciuri strain 82104]
MEKLKQKRVGIYVRVSTEMQSSEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPALQRMLQDAKNGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVSTSSGKLMLQVLASFAEFERNNIVDNIFMGQTIRAKEGYYQGN
IPYAYDKVPDSKHELMINQHEANVVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYVGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQTLWDKVQARKKQVSEKPQVHGKGTNLLTGLISCERCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQEHQIDTSALNHDIAYKQQQYD
EVQIKLDNLIKTLEDNPDLTSVLKNTIHQYKKQLNDITNQINQLKQQQSVPKTIYDANEIATILRHIFKNIETMDKAQLK
ALYLTVIDHIDIRKDEHHKKQFYVTLKLNHEIIKQIFHNTPLDEVQLSTSSLLLSQTLYLPIS

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=505439 IYN86_RS00290 WP_107378649.1 59648..61279(-) (ccrB) [Mammaliicoccus sciuri strain 82104]
ATGGAAAAACTTAAACAAAAGCGTGTGGGAATTTATGTACGCGTATCGACTGAGATGCAGAGCTCAGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTATACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGCCCTGCACTACAACGTATGTTACAAGACGCTAAAAATGGTCATATCGATTGTGTTATG
GTCTACAAAACAAATCGATTAGCACGTAATACATCTGACCTACTCAAAATCGTTGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTCTGTCTGAACGTATGGAAGTTAGCACGAGTAGTGGTAAGCTCATGCTCCAGGTGCTTGCGAGCTTCGCAG
AATTTGAACGCAATAATATTGTAGACAATATATTTATGGGCCAGACAATTAGAGCGAAAGAAGGGTATTATCAGGGTAAT
ATTCCCTATGCGTATGATAAAGTACCTGACAGTAAACACGAACTTATGATTAATCAACATGAAGCCAATGTTGTAAAGTA
TATCTTCGAATCATATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATGCGCTCAACCATAAAGGTTATGTCACAAAGA
AAGGGAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCTAATCCCTTCTATGTCGGTAAAATACAATTCGCGAAA
TACAAAGATTGGAATGATAAACGACGTAAAGGGTTAAATGATAAACCCGTAATTGCCGAAGGCAAACACACCCCTATTAT
TAGCCAAACATTATGGGATAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTACATGGTAAAGGAACCA
ACCTTTTGACTGGATTAATTTCGTGTGAAAGATGTGGAGCGGCATACGCAGCATCGAATACAACGAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCGTGTAGTAACTTTCGTAATAAAGGGTCAAAAGTATGTTCTGCGAATAGTGT
CAGAGCCGATGTAATTGAAAAATATGTTATGGATCAAATACTCGAAATCGTTAAAAGTGACAAAGTTATCAAACAAGTCG
TTGAGCGTGTCAATCAAGAACATCAAATTGATACGTCTGCACTCAATCATGATATCGCATATAAGCAACAACAATATGAT
GAGGTCCAAATCAAATTAGATAACTTGATCAAAACACTTGAAGATAATCCAGACTTAACATCTGTGCTTAAAAATACGAT
TCATCAGTATAAAAAACAACTCAATGACATCACAAATCAAATCAATCAACTTAAGCAACAACAAAGTGTTCCCAAAACAA
TATATGACGCTAATGAGATTGCGACTATATTACGTCATATATTCAAAAATATCGAAACCATGGATAAAGCACAACTCAAA
GCACTATACCTTACGGTCATAGACCACATTGATATTCGTAAAGACGAACATCATAAAAAACAGTTCTACGTCACATTAAA
ACTCAATCATGAAATCATTAAACAAATCTTCCATAATACCCCTCTCGACGAAGTGCAACTCAGCACTTCGTCTTTATTAT
TATCTCAAACACTCTATTTGCCTATCTCATAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

81.181

99.816

0.81