Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   IXK98_RS23035 Genome accession   NZ_CP064858
Coordinates   3107921..3108928 (-) Length   335 a.a.
NCBI ID   WP_069667304.1    Uniprot ID   A0A178JCI4
Organism   Vibrio europaeus strain 07/118 T2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3102921..3113928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS23015 (IXK98_23015) - 3103069..3104667 (-) 1599 WP_171802188.1 BCCT family transporter -
  IXK98_RS23020 (IXK98_23020) hslU 3104945..3106279 (-) 1335 WP_069667307.1 HslU--HslV peptidase ATPase subunit -
  IXK98_RS23025 (IXK98_23025) hslV 3106330..3106872 (-) 543 WP_004743263.1 ATP-dependent protease subunit HslV -
  IXK98_RS23030 (IXK98_23030) ftsN 3107254..3107802 (-) 549 WP_171802189.1 cell division protein FtsN -
  IXK98_RS23035 (IXK98_23035) cytR 3107921..3108928 (-) 1008 WP_069667304.1 DNA-binding transcriptional regulator CytR Regulator
  IXK98_RS23040 (IXK98_23040) priA 3109286..3111487 (-) 2202 WP_171802190.1 primosomal protein N' -
  IXK98_RS23045 (IXK98_23045) rpmE 3111772..3111990 (+) 219 WP_004743259.1 50S ribosomal protein L31 -
  IXK98_RS23050 (IXK98_23050) - 3112247..3113524 (+) 1278 WP_171383602.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36902.57 Da        Isoelectric Point: 6.6018

>NTDB_id=505408 IXK98_RS23035 WP_069667304.1 3107921..3108928(-) (cytR) [Vibrio europaeus strain 07/118 T2]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPETATLCQFRHQGYQQALRRAGIAMNPNYCAIGDFTFEAGTKAIRQLLALPDAPTA
VFCHNDAMAIGVIQEAKKLGLRVPQDLSVVGFDDIHFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPRVL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=505408 IXK98_RS23035 WP_069667304.1 3107921..3108928(-) (cytR) [Vibrio europaeus strain 07/118 T2]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTTTCAACAGCGACAGTGTCTAGAGCGCTAATGAATCCAGAAAA
GGTATCGTCATCGACAAGGAAAAGAGTCGAAGATGCTGTTTTAGAAGCTGGTTATTCACCAAACTCGTTGGCGCGCAACT
TGCGTCGTAACGAATCAAAAACAATCATCGCAATCATTCCAGATATTTGTGATCCCTACTACACCGAGATCATTCGCGGA
ATTGAAGATGCGGCAATGGAGCACGGATACATCGTTTTGCTTGGCGATAGTGGGCAGCAGAAGAAGCGCGAAAGCTCATT
TGTAAACCTAGTATTTACTAAGCAAGCGGATGGCATGTTGCTGCTTGGGACCGATCTTCCTTTTGACGTCAGTAAACCTG
AACAAAAGAACTTACCTCCTATGGTAATGGCTTGTGAGTTTGCTCCTGAGTTGGAGTTACCAACGGTACACATCGACAAC
CTGACTTCTGCATTTGAAGCGGTAAACTATCTAACACAGATGGGTCATAAACGTATTGCACAAATCTCAGGCCCTGAAAC
GGCTACCTTATGTCAGTTCCGTCATCAAGGTTATCAACAAGCCCTGCGACGTGCCGGAATCGCTATGAACCCGAATTATT
GCGCCATAGGTGATTTTACCTTTGAGGCCGGAACTAAAGCGATCCGCCAGCTTTTAGCTTTGCCAGATGCTCCGACAGCA
GTGTTCTGTCACAACGATGCCATGGCAATTGGTGTGATTCAAGAAGCGAAGAAACTAGGTTTGCGTGTTCCGCAAGACCT
ATCCGTTGTAGGATTTGATGATATTCACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAGCCTCGCTATG
AAATCGGCCGCCAAGCAATGCTCATGATGCTTGAGCTGCTACGTGGACATGATGTTCGCGCAGGGTCGAGATTGCTTGAA
ACCAAGCTGGTGGTACGTGAAAGCGCTGCGCCTCCAAGAGTGCTTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178JCI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

92.47

99.104

0.916
  cytR Vibrio parahaemolyticus RIMD 2210633

88.589

99.403

0.881