Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SII_RS07540 Genome accession   NC_022237
Coordinates   1550595..1551053 (-) Length   152 a.a.
NCBI ID   WP_020999090.1    Uniprot ID   T1ZG79
Organism   Streptococcus intermedius C270     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545595..1556053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07525 (SII_1482) - 1546588..1547001 (-) 414 WP_003075980.1 cupin domain-containing protein -
  SII_RS07530 (SII_1483) rcrQ 1547086..1548846 (-) 1761 WP_020999088.1 ABC transporter ATP-binding protein Regulator
  SII_RS07535 (SII_1484) rcrP 1548836..1550602 (-) 1767 WP_020999089.1 ABC transporter ATP-binding protein Regulator
  SII_RS07540 (SII_1485) rcrR 1550595..1551053 (-) 459 WP_020999090.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SII_RS07545 (SII_1486) - 1551225..1552412 (-) 1188 WP_020999091.1 NADH-dependent flavin oxidoreductase -
  SII_RS07550 (SII_1487) - 1552679..1553089 (-) 411 WP_020999092.1 peptide deformylase -
  SII_RS07555 (SII_1488) scrK 1553155..1554054 (-) 900 WP_003074417.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17782.80 Da        Isoelectric Point: 9.5065

>NTDB_id=50540 SII_RS07540 WP_020999090.1 1550595..1551053(-) (rcrR) [Streptococcus intermedius C270]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDCGKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSEADKRAKIIRLTSESKERMNKIRNFFDEMDRCLLTGISEEDLMTFFQIMGRFYQNIEKLEKGEANG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=50540 SII_RS07540 WP_020999090.1 1550595..1551053(-) (rcrR) [Streptococcus intermedius C270]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGGAAGACACATCTGATGATTCAAAAAATTGCCAAAGAGCGAGG
GATTGAATTTATGGCGGGTCCACAAGGGCAAGTATTGCATTTTGTGAATCACCGAGAAGATTGTGGCAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGAATTACCAAGTCAGTTGCTAGTAACTTAATGAAGCGAATGGTTAAAAATGGCCTG
ATTTATCTGGAAGTGAGTGAAGCAGATAAACGCGCTAAGATTATTCGTTTGACATCAGAATCAAAAGAGCGCATGAATAA
AATTCGGAATTTCTTTGATGAGATGGATCGCTGCTTATTGACTGGCATTTCAGAAGAAGATTTGATGACTTTTTTTCAAA
TAATGGGGCGATTTTACCAGAATATTGAAAAATTAGAAAAAGGAGAAGCGAATGGTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZG79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.466

96.053

0.408

Multiple sequence alignment