Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IXK98_RS21845 Genome accession   NZ_CP064858
Coordinates   2864046..2864564 (-) Length   172 a.a.
NCBI ID   WP_069667479.1    Uniprot ID   A0A178JBA9
Organism   Vibrio europaeus strain 07/118 T2     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2850492..2865188 2864046..2864564 within 0


Gene organization within MGE regions


Location: 2850492..2865188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS21770 (IXK98_21770) - 2850492..2851754 (-) 1263 WP_171802093.1 HD-GYP domain-containing protein -
  IXK98_RS21775 (IXK98_21775) - 2851874..2852281 (-) 408 WP_004748178.1 VOC family protein -
  IXK98_RS21780 (IXK98_21780) - 2852928..2853662 (-) 735 WP_195877264.1 hypothetical protein -
  IXK98_RS21785 (IXK98_21785) - 2853725..2854639 (-) 915 WP_195877265.1 S1/P1 nuclease -
  IXK98_RS21790 (IXK98_21790) - 2854740..2855513 (+) 774 WP_195877266.1 EndoU domain-containing protein -
  IXK98_RS21795 (IXK98_21795) - 2855780..2857105 (+) 1326 WP_195877267.1 DUF3427 domain-containing protein -
  IXK98_RS21800 (IXK98_21800) - 2857107..2857682 (-) 576 WP_195877268.1 inovirus-type Gp2 protein -
  IXK98_RS21805 (IXK98_21805) - 2858004..2858237 (-) 234 WP_004748173.1 hypothetical protein -
  IXK98_RS21810 (IXK98_21810) - 2858525..2859598 (+) 1074 WP_195877269.1 hypothetical protein -
  IXK98_RS21815 (IXK98_21815) - 2859591..2860721 (+) 1131 WP_195877270.1 hypothetical protein -
  IXK98_RS21820 (IXK98_21820) - 2860672..2861376 (+) 705 WP_004748167.1 hypothetical protein -
  IXK98_RS21825 (IXK98_21825) - 2861435..2861977 (-) 543 WP_230300090.1 helix-turn-helix domain-containing protein -
  IXK98_RS21830 (IXK98_21830) - 2861943..2862983 (-) 1041 WP_195877271.1 tyrosine-type recombinase/integrase -
  IXK98_RS21840 (IXK98_21840) - 2863504..2863980 (+) 477 WP_171802094.1 RDD family protein -
  IXK98_RS21845 (IXK98_21845) luxS 2864046..2864564 (-) 519 WP_069667479.1 S-ribosylhomocysteine lyase Regulator
  IXK98_RS21850 (IXK98_21850) - 2864589..2865188 (-) 600 WP_069667478.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19030.77 Da        Isoelectric Point: 4.6153

>NTDB_id=505398 IXK98_RS21845 WP_069667479.1 2864046..2864564(-) (luxS) [Vibrio europaeus strain 07/118 T2]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNGDAVEIIDISP
MGCRTGFYMSLIGTPQEQQVADAWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAEAILAAGVSVNKNDELA
LPEEMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=505398 IXK98_RS21845 WP_069667479.1 2864046..2864564(-) (luxS) [Vibrio europaeus strain 07/118 T2]
ATGCCGTTATTAGATAGTTTTACCGTAGACCACACAAGAATGAATGCACCTGCCGTCCGTGTAGCAAAAACCATGACGAC
ACCCAAAGGTGACACCATTACGGTATTTGACTTACGCTTTACCGCGCCAAATAAAGATATCTTGTCAGAAAGGGGTATTC
ATACTTTAGAGCACCTTTACGCTGGCTTTATGCGTAATCACTTGAATGGCGATGCGGTGGAGATTATCGATATCTCTCCA
ATGGGCTGTCGTACAGGCTTTTACATGAGCCTGATTGGTACGCCACAAGAGCAGCAAGTTGCTGACGCTTGGTTATCTGC
AATGCAAGACGTGTTAAAAGTAGAAAGCCAGAACAAAATCCCAGAACTGAATGAGTACCAATGTGGTACAGCGGCTATGC
ACTCGTTAGATGAAGCGAAACAGATTGCTGAAGCTATTCTTGCAGCTGGAGTTTCGGTTAACAAAAATGATGAGCTAGCG
CTGCCGGAAGAGATGCTAAAAGAGCTTAAAATAGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178JBA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872