Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IXK98_RS19680 Genome accession   NZ_CP064858
Coordinates   2419957..2421351 (-) Length   464 a.a.
NCBI ID   WP_171801944.1    Uniprot ID   A0AAE7AUU6
Organism   Vibrio europaeus strain 07/118 T2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2414957..2426351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS19645 (IXK98_19645) moaE 2415672..2416133 (-) 462 WP_171801940.1 molybdopterin synthase catalytic subunit MoaE -
  IXK98_RS19650 (IXK98_19650) moaD 2416136..2416381 (-) 246 WP_171801941.1 molybdopterin synthase sulfur carrier subunit -
  IXK98_RS19655 (IXK98_19655) moaC 2416378..2416857 (-) 480 WP_195877226.1 cyclic pyranopterin monophosphate synthase MoaC -
  IXK98_RS19660 (IXK98_19660) moaB 2416873..2417385 (-) 513 WP_004748419.1 molybdenum cofactor biosynthesis protein B -
  IXK98_RS19665 (IXK98_19665) moaA 2417462..2418451 (-) 990 WP_004748418.1 GTP 3',8-cyclase MoaA -
  IXK98_RS19670 (IXK98_19670) - 2418743..2419630 (+) 888 WP_171801943.1 YvcK family protein -
  IXK98_RS19675 (IXK98_19675) luxU 2419616..2419957 (-) 342 WP_004748414.1 quorum-sensing phosphorelay protein LuxU -
  IXK98_RS19680 (IXK98_19680) luxO 2419957..2421351 (-) 1395 WP_171801944.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IXK98_RS19685 (IXK98_19685) uvrB 2421613..2423643 (-) 2031 WP_195877227.1 excinuclease ABC subunit UvrB -
  IXK98_RS19695 (IXK98_19695) - 2424519..2425247 (-) 729 WP_171801946.1 UTRA domain-containing protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51578.89 Da        Isoelectric Point: 5.7859

>NTDB_id=505397 IXK98_RS19680 WP_171801944.1 2419957..2421351(-) (luxO) [Vibrio europaeus strain 07/118 T2]
MQYNTQAKNSKYLLMVEDTASVAALYRSYLTPLQIDINIVGTGRDAIDSLNFRTPDLILLDLRLPDMTGMDVLHAVKEKN
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKANKLKNEGDNSGSQGYQGFIGSSQTMQAVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNKDPWKEVEEGRFREDLYYRLYVIPLHLPPLRE
RGDDIIEIAYSLLGFMSKEEGKDFVRLAAEVVDRFARYEWPGNVRQLQNVLRNVVVLNNGREIDLAMLPPPLNQPSKNEI
RVTRPQNETVSVQDIFPLWLTEKNAIEQAIKACDGNIPKAAGYLDVSPSTIYRKLQAWNAKEVQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=505397 IXK98_RS19680 WP_171801944.1 2419957..2421351(-) (luxO) [Vibrio europaeus strain 07/118 T2]
ATGCAATATAATACACAAGCAAAAAACTCAAAGTATTTGTTGATGGTTGAAGATACCGCCTCTGTAGCGGCGCTGTATCG
TTCTTATCTCACGCCACTGCAAATTGATATCAACATTGTCGGCACTGGCCGTGATGCCATTGATAGCCTCAATTTTCGAA
CTCCAGACCTTATCCTGCTCGATCTGCGACTACCTGATATGACAGGTATGGACGTCTTGCACGCGGTGAAAGAAAAGAAC
CCGGATGTGCCCGTTATTTTTATGACCGCCCATGGTTCGATTGATACCGCCGTAGAAGCAATGCGTCATGGCGCGCAAGA
CTTCCTAATTAAACCCTGTGAAGCTGATCGACTCCGTGTAACAGTTAACAACGCTCTGCGTAAAGCGAACAAGCTGAAAA
ACGAAGGTGATAATTCGGGAAGTCAGGGATATCAAGGTTTCATCGGCAGTAGTCAAACGATGCAGGCGGTTTACAGAACC
ATTGACTCGGCGGCGACGAGTAAAGCCAGTATCTTTATTACTGGAGAAAGTGGTACTGGTAAAGAAGTGTGTGCAGAAGC
AATTCACGCAACCAGTAAACGTGGTGACAAACCGTTTATTGCCATCAACTGTGCTGCCATCCCAAAAGATCTGATTGAAA
GTGAGCTATTTGGTCACGTTAAAGGCGCATTTACCGGTGCTGCTACGGATCGCCAAGGTGCGGCGGAGCTTGCTGATGGC
GGCACGCTTTTCCTTGATGAGCTGTGTGAAATGGACTTAGATTTGCAAACTAAGCTATTACGTTTTATTCAAACTGGTAC
TTTCCAGAAAGTTGGTTCGTCGAAGATGAAGAGCGTGGATGTACGTTTTGTTTGTGCAACCAATAAAGATCCTTGGAAAG
AAGTCGAAGAAGGGCGCTTTCGCGAAGATTTGTACTATCGTTTGTATGTTATTCCTCTTCATTTGCCACCTTTGCGTGAA
CGCGGTGACGATATCATTGAAATTGCCTATTCACTGTTGGGTTTCATGTCTAAGGAAGAGGGTAAAGATTTTGTGCGTTT
GGCGGCTGAGGTTGTCGACCGTTTCGCGCGCTACGAATGGCCGGGCAATGTACGCCAGCTGCAAAATGTTTTACGTAATG
TGGTGGTATTAAATAATGGCCGTGAGATTGATTTAGCCATGCTGCCACCGCCGCTCAATCAACCATCAAAAAATGAGATT
CGCGTTACTAGGCCGCAAAATGAAACAGTCTCAGTACAAGATATATTCCCTTTGTGGCTTACTGAGAAAAATGCCATTGA
ACAGGCAATAAAAGCGTGTGATGGTAACATACCGAAAGCCGCGGGCTATTTGGATGTAAGTCCATCAACCATTTACAGAA
AACTACAAGCGTGGAATGCCAAGGAAGTACAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.892

96.121

0.845