Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KRH48_RS00340 Genome accession   NZ_CP076839
Coordinates   66288..66914 (-) Length   208 a.a.
NCBI ID   WP_001108886.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-100-016     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 61288..71914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRH48_RS00320 (KRH48_00320) - 61909..62595 (+) 687 WP_000362222.1 DnaD domain-containing protein -
  KRH48_RS00325 (KRH48_00325) nth 62585..63244 (+) 660 WP_000253765.1 endonuclease III -
  KRH48_RS00330 (KRH48_00330) - 63249..63590 (+) 342 WP_000182028.1 YpoC family protein -
  KRH48_RS00335 (KRH48_00335) - 64108..66291 (-) 2184 WP_000138359.1 transglycosylase domain-containing protein -
  KRH48_RS00340 (KRH48_00340) recU 66288..66914 (-) 627 WP_001108886.1 Holliday junction resolvase RecU Machinery gene
  KRH48_RS00345 (KRH48_00345) - 67453..67803 (+) 351 WP_001000803.1 YppE family protein -
  KRH48_RS00350 (KRH48_00350) - 67796..68359 (+) 564 WP_000241308.1 DUF1273 domain-containing protein -
  KRH48_RS00355 (KRH48_00355) gpsB 68373..68717 (+) 345 WP_001286320.1 cell division regulator GpsB -
  KRH48_RS00365 (KRH48_00365) - 69368..70513 (+) 1146 WP_000487157.1 class I SAM-dependent RNA methyltransferase -
  KRH48_RS00370 (KRH48_00370) - 70597..70929 (+) 333 WP_000516800.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.77 Da        Isoelectric Point: 9.6288

>NTDB_id=505397 KRH48_RS00340 WP_001108886.1 66288..66914(-) (recU) [Staphylococcus aureus strain 55-100-016]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYQDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=505397 KRH48_RS00340 WP_001108886.1 66288..66914(-) (recU) [Staphylococcus aureus strain 55-100-016]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTATATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATCAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529