Detailed information NTG0505379

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IXK98_RS10795
• Genome accession: NZ_CP064858
• Coordinates: 446590..447564 (+)
• Length: 324 a.a.
• NCBI ID: WP_069667601.1
• Uniprot ID: A0A178JC81
• Organism: Vibrio europaeus strain 07/118 T2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 441590..452564

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IXK98_RS10760 (IXK98_10760)	ftsB	441656..441934 (+)	279	WP_004742582.1	cell division protein FtsB	-
IXK98_RS10765 (IXK98_10765)	ispD	441935..442642 (+)	708	WP_069667606.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IXK98_RS10770 (IXK98_10770)	ispF	442646..443122 (+)	477	WP_004742584.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IXK98_RS10775 (IXK98_10775)	truD	443176..444222 (+)	1047	WP_171801077.1	tRNA pseudouridine(13) synthase TruD	-
IXK98_RS10780 (IXK98_10780)	surE	444219..444977 (+)	759	WP_171382768.1	5'/3'-nucleotidase SurE	-
IXK98_RS10785 (IXK98_10785)	-	444980..445606 (+)	627	WP_171382769.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IXK98_RS10790 (IXK98_10790)	nlpD	445609..446520 (+)	912	WP_195877353.1	murein hydrolase activator NlpD	-
IXK98_RS10795 (IXK98_10795)	rpoS	446590..447564 (+)	975	WP_069667601.1	RNA polymerase sigma factor RpoS	Regulator
IXK98_RS10800 (IXK98_10800)	-	447631..448902 (-)	1272	WP_069667600.1	HlyC/CorC family transporter	-
IXK98_RS10805 (IXK98_10805)	-	449031..449825 (-)	795	WP_069667599.1	inner membrane protein YpjD	-
IXK98_RS10810 (IXK98_10810)	ffh	450034..451425 (+)	1392	WP_069667598.1	signal recognition particle protein	-
IXK98_RS10815 (IXK98_10815)	rpsP	451654..451902 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
IXK98_RS10820 (IXK98_10820)	rimM	451932..452480 (+)	549	WP_069667597.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37137.09 Da
• Isoelectric Point: 4.7775

>NTDB_id=505379 IXK98_RS10795 WP_069667601.1 446590..447564(+) (rpoS) [Vibrio europaeus strain 07/118 T2]
MSISNTATKVEEFEIGRETTETFQAVESAKPAQETKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDINNSDPEVS
TQDDDIKNSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMENLFS
VTED

Nucleotide

• Length: 975 bp

>NTDB_id=505379 IXK98_RS10795 WP_069667601.1 446590..447564(+) (rpoS) [Vibrio europaeus strain 07/118 T2]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAATTCGAAATCGGTCGAGAAACAACGGAAACGTTTCAAGCCGTAGA
ATCAGCAAAACCCGCACAAGAAACCAAAGAAGAGTTTGATGCATCGACCAAAAGTCTTGATGCTACCCAGCTTTACTTAG
GTGAAATTGGTTTTTCTCCACTACTTACCGCTGAAGAAGAAGTTCTGTATGCGCGTCGTGCCCTGCGAGGTGACGAAGCT
GCGCGTAAACGAATGATCGAAAGTAACCTTCGCTTAGTAGTGAAAATCTCACGTCGATACAGTAACCGTGGCCTAGCGCT
TCTTGATCTTATTGAAGAAGGAAATCTAGGATTGATCCGTGCGGTTGAGAAGTTCGACCCAGAGCGTGGTTTCAGATTCT
CCACCTACGCAACATGGTGGATTCGCCAAACCATTGAACGTGCATTAATGAACCAAACTCGCACGATTCGATTACCTATT
CACGTCGTCAAAGAGCTTAATATTTACCTGCGTACCGCCCGTGAACTTTCACAGAAACTTGACCATGAGCCTACTGCAGA
AGAGATCGCGACTCAGCTAGATAAGCCCGTCGATGATGTGAGTAAAATGCTCCGCCTTAATGAACGCATCAGTTCTGTTG
ATACGCCCATAGGTGGTGATGGTGAAAAGGCTCTGCTTGATATCATTCCAGATATCAATAACTCAGACCCTGAAGTCTCA
ACTCAAGATGACGACATCAAAAACTCTCTAATCCATTGGTTAGATGAGCTTAATCCAAAGCAAAAAGAAGTCTTAGCGCG
TCGCTTTGGCCTTCTTGGCTACGAGCCATCGACTCTTGAAGAAGTAGGTCGCGAGATTAACCTTACTCGTGAACGTGTTC
GTCAAATACAGGTAGAAGGTTTACGTCGCCTACGAGAGATATTGATCAAGCAGGGGCTAAACATGGAAAACCTATTTAGT
GTCACTGAAGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

3D structure

• AlphaFold DB: A0A178JC81

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.631	100	0.867