Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPSH112_RS01185 Genome accession   NC_017741
Coordinates   234413..234703 (+) Length   96 a.a.
NCBI ID   WP_000736104.1    Uniprot ID   -
Organism   Helicobacter pylori Shi112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 229413..239703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH112_RS01155 (HPSH112_01170) - 229878..230111 (+) 234 WP_000450342.1 ribbon-helix-helix domain-containing protein -
  HPSH112_RS01160 (HPSH112_01175) radA 230224..231570 (+) 1347 WP_014662196.1 DNA repair protein RadA -
  HPSH112_RS01165 (HPSH112_01180) msrB 231693..232772 (+) 1080 WP_000866564.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPSH112_RS01170 (HPSH112_01185) - 232925..233713 (+) 789 WP_001140588.1 hypothetical protein -
  HPSH112_RS01175 (HPSH112_01190) - 233716..233940 (+) 225 WP_000188956.1 hypothetical protein -
  HPSH112_RS01180 (HPSH112_01195) - 233937..234416 (+) 480 WP_000571647.1 hypothetical protein -
  HPSH112_RS01185 (HPSH112_01200) comB2 234413..234703 (+) 291 WP_000736104.1 TrbC/VirB2 family protein Machinery gene
  HPSH112_RS01190 (HPSH112_01205) comB3 234713..234976 (+) 264 WP_001177721.1 hypothetical protein Machinery gene
  HPSH112_RS01195 (HPSH112_01210) - 234988..235224 (+) 237 WP_000806906.1 hypothetical protein -
  HPSH112_RS01200 - 235224..236107 (+) 884 Protein_227 transporter -
  HPSH112_RS01205 (HPSH112_01225) tnpA 236297..236734 (+) 438 WP_041199789.1 IS200/IS605 family transposase -
  HPSH112_RS01210 (HPSH112_01230) - 236697..237844 (+) 1148 Protein_229 RNA-guided endonuclease InsQ/TnpB family protein -
  HPSH112_RS01215 (HPSH112_01235) - 237920..238648 (+) 729 Protein_230 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10958.29 Da        Isoelectric Point: 11.1589

>NTDB_id=50535 HPSH112_RS01185 WP_000736104.1 234413..234703(+) (comB2) [Helicobacter pylori Shi112]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPALAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=50535 HPSH112_RS01185 WP_000736104.1 234413..234703(+) (comB2) [Helicobacter pylori Shi112]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATGACTAC
ATTTTTTAATAGCATTGAACAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTGGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAGCCTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542

Multiple sequence alignment