Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IPT86_RS14585 Genome accession   NZ_CP064847
Coordinates   2965941..2966570 (-) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain 20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2960941..2971570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPT86_RS14570 (IPT86_14570) helD 2961183..2963237 (-) 2055 WP_001361412.1 DNA helicase IV -
  IPT86_RS14575 (IPT86_14575) yccF 2963360..2963806 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IPT86_RS14580 (IPT86_14580) yccS 2963816..2965978 (+) 2163 WP_000875039.1 YccS family putative transporter -
  IPT86_RS14585 (IPT86_14585) sxy/tfoX 2965941..2966570 (-) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IPT86_RS14590 (IPT86_14590) sulA 2966788..2967297 (+) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  IPT86_RS14595 (IPT86_14595) ompA 2967654..2968706 (+) 1053 WP_001346420.1 porin OmpA -
  IPT86_RS14600 (IPT86_14600) matP 2968784..2969236 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IPT86_RS14605 (IPT86_14605) ycbZ 2969422..2971182 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=505328 IPT86_RS14585 WP_000839133.1 2965941..2966570(-) (sxy/tfoX) [Escherichia coli strain 20]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=505328 IPT86_RS14585 WP_000839133.1 2965941..2966570(-) (sxy/tfoX) [Escherichia coli strain 20]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995