Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IXY25_RS04625 Genome accession   NZ_CP064846
Coordinates   1005045..1005824 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BZR 86     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000045..1010824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXY25_RS04595 (IXY25_04535) fliH 1000089..1000844 (-) 756 WP_025851275.1 flagellar assembly protein FliH -
  IXY25_RS04600 (IXY25_04540) fliG 1000837..1001853 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  IXY25_RS04605 (IXY25_04545) fliF 1001866..1003476 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  IXY25_RS04610 (IXY25_04550) fliE 1003519..1003839 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  IXY25_RS04615 (IXY25_04555) flgC 1003850..1004302 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  IXY25_RS04620 (IXY25_04560) flgB 1004302..1004691 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  IXY25_RS04625 (IXY25_04565) codY 1005045..1005824 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IXY25_RS04630 (IXY25_04570) hslU 1005862..1007265 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  IXY25_RS04635 (IXY25_04575) hslV 1007282..1007827 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  IXY25_RS04640 (IXY25_04580) xerC 1007843..1008760 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  IXY25_RS04645 (IXY25_04585) trmFO 1008830..1010137 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=505262 IXY25_RS04625 WP_003154263.1 1005045..1005824(-) (codY) [Bacillus velezensis strain BZR 86]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=505262 IXY25_RS04625 WP_003154263.1 1005045..1005824(-) (codY) [Bacillus velezensis strain BZR 86]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471