Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IXY24_RS06910 Genome accession   NZ_CP064845
Coordinates   1305365..1307095 (+) Length   576 a.a.
NCBI ID   WP_025852862.1    Uniprot ID   -
Organism   Bacillus velezensis strain BZR 277     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1300365..1312095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXY24_RS06885 (IXY24_06810) - 1300766..1301020 (+) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -
  IXY24_RS06890 (IXY24_06815) - 1301010..1301900 (+) 891 WP_014305396.1 polyprenyl synthetase family protein -
  IXY24_RS06895 (IXY24_06820) dxs 1302044..1303945 (+) 1902 WP_024085592.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IXY24_RS06900 (IXY24_06825) - 1303942..1304787 (+) 846 WP_003153172.1 TlyA family RNA methyltransferase -
  IXY24_RS06905 (IXY24_06830) ahrC 1304884..1305333 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  IXY24_RS06910 (IXY24_06835) recN 1305365..1307095 (+) 1731 WP_025852862.1 DNA repair protein RecN Machinery gene
  IXY24_RS06915 (IXY24_06840) spoIVB 1307259..1308539 (+) 1281 WP_071543353.1 SpoIVB peptidase -
  IXY24_RS06920 (IXY24_06845) spo0A 1308820..1309620 (+) 801 WP_025852860.1 sporulation transcription factor Spo0A Regulator
  IXY24_RS06925 (IXY24_06850) alr 1309768..1310949 (-) 1182 WP_025852858.1 alanine racemase -
  IXY24_RS06930 (IXY24_06855) - 1311125..1311337 (-) 213 WP_014305392.1 spore germination protein -
  IXY24_RS06935 (IXY24_06860) - 1311463..1311675 (-) 213 WP_003153183.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64063.91 Da        Isoelectric Point: 4.7301

>NTDB_id=505201 IXY24_RS06910 WP_025852862.1 1305365..1307095(+) (recN) [Bacillus velezensis strain BZR 277]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELQSLYMGKSTFDTEFLV
KIDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=505201 IXY24_RS06910 WP_025852862.1 1305365..1307095(+) (recN) [Bacillus velezensis strain BZR 277]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGACGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAACACTTGGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCTAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCCCT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCATGGGCCA
AGAAACTGGCGGAAGCGATTCATCAGGAATTACAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAATCGATCCGTCTGCCAGTGAAGCTCCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTCA
CGCCGCTTTCCAAGCAAGATAAGGTAGCGGAAATCGGCCGCATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.542

100

0.885