Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SII_RS06200 Genome accession   NC_022237
Coordinates   1276095..1276781 (-) Length   228 a.a.
NCBI ID   WP_020998929.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271095..1281781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS06180 (SII_1218) - 1271293..1273272 (-) 1980 WP_020998926.1 FtsX-like permease family protein -
  SII_RS06185 (SII_1219) - 1273265..1274032 (-) 768 WP_009568235.1 ABC transporter ATP-binding protein -
  SII_RS06190 (SII_1220) - 1274250..1275008 (-) 759 WP_020998927.1 TraX family protein -
  SII_RS06195 (SII_1221) - 1275131..1276111 (-) 981 WP_003073460.1 sensor histidine kinase -
  SII_RS06200 (SII_1223) braR 1276095..1276781 (-) 687 WP_020998929.1 response regulator transcription factor Regulator
  SII_RS06205 (SII_1222) - 1276873..1278054 (+) 1182 WP_041823250.1 DUF2974 domain-containing protein -
  SII_RS06210 (SII_1224) metG 1278144..1280141 (-) 1998 WP_020998930.1 methionine--tRNA ligase -
  SII_RS06215 (SII_1225) - 1280388..1280648 (+) 261 WP_003043441.1 SemiSWEET family transporter -
  SII_RS06220 (SII_1226) - 1281011..1281643 (-) 633 WP_003028311.1 DUF421 domain-containing protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26402.75 Da        Isoelectric Point: 5.0092

>NTDB_id=50520 SII_RS06200 WP_020998929.1 1276095..1276781(-) (braR) [Streptococcus intermedius C270]
MHKILLVEDDAVIRQQVKKMLEQWGFEVIAVEDFMQVLTIFVKEEPHLVLMDIGLPLFNGYHWCQEIRKISKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYEFGTDQSLLEYHGVILNLKSMDMMYDGEVITLTKNEFQIL
RVLFERSGSIVSRDDLMKELWNSDFFIDDNTLSVNVARLRKKLEEVGLKNFIETKKGIGYRLINGTSE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=50520 SII_RS06200 WP_020998929.1 1276095..1276781(-) (braR) [Streptococcus intermedius C270]
ATGCACAAGATATTATTAGTGGAAGACGATGCCGTCATTCGTCAACAAGTCAAAAAAATGCTGGAACAATGGGGATTTGA
GGTGATTGCTGTAGAGGATTTTATGCAGGTGTTGACGATTTTTGTTAAGGAAGAACCGCATCTAGTCCTGATGGATATTG
GTTTACCGTTGTTTAATGGTTATCATTGGTGCCAAGAAATTCGCAAGATTTCTAAAGTGCCTATTATGTTTTTATCTTCA
CGTGATCAGGCGATGGATATTGTCATGGCGATTAACATGGGCGGAGATGATTTTGTGACGAAGCCATTTGACAATAATGT
CTTGCTGGCTAAGGTTCAAGGACTCTTGCGTCGTTCGTATGAATTTGGGACAGATCAAAGTTTGTTGGAATACCATGGGG
TTATTCTCAATCTCAAGTCCATGGATATGATGTATGATGGAGAAGTGATTACGTTAACGAAAAATGAATTTCAAATTCTG
CGTGTGCTATTTGAGCGTTCTGGCAGTATTGTTTCGCGTGATGATCTCATGAAAGAACTTTGGAATAGTGATTTCTTTAT
TGATGATAATACCTTATCTGTGAATGTTGCACGGCTGCGCAAGAAATTAGAAGAAGTCGGTCTCAAGAATTTCATTGAAA
CAAAGAAAGGTATAGGGTACAGGTTAATTAATGGAACATCAGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-222)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

49.545

96.491

0.478

Multiple sequence alignment