Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IXY24_RS06730 Genome accession   NZ_CP064845
Coordinates   1275122..1275457 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain BZR 277     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270122..1280457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXY24_RS06680 (IXY24_06605) comGC 1270356..1270622 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  IXY24_RS06685 (IXY24_06610) comGD 1270612..1271049 (+) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  IXY24_RS06690 (IXY24_06615) comGE 1271033..1271347 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  IXY24_RS06695 (IXY24_06620) comGF 1271256..1271756 (+) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  IXY24_RS06700 (IXY24_06625) comGG 1271757..1272134 (+) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  IXY24_RS06705 (IXY24_06630) - 1272191..1272370 (+) 180 WP_003153093.1 YqzE family protein -
  IXY24_RS06710 (IXY24_06635) - 1272410..1272739 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  IXY24_RS06715 (IXY24_06640) tapA 1272998..1273669 (+) 672 WP_025852919.1 amyloid fiber anchoring/assembly protein TapA -
  IXY24_RS06720 (IXY24_06645) sipW 1273641..1274225 (+) 585 WP_025852917.1 signal peptidase I SipW -
  IXY24_RS06725 (IXY24_06650) tasA 1274289..1275074 (+) 786 WP_003153102.1 biofilm matrix protein TasA -
  IXY24_RS06730 (IXY24_06655) sinR 1275122..1275457 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  IXY24_RS06735 (IXY24_06660) sinI 1275491..1275664 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  IXY24_RS06740 (IXY24_06665) - 1275841..1276635 (-) 795 WP_014305407.1 YqhG family protein -
  IXY24_RS06745 (IXY24_06670) - 1276653..1278323 (-) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  IXY24_RS06750 (IXY24_06675) gcvT 1278746..1279846 (+) 1101 WP_003153108.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=505199 IXY24_RS06730 WP_003153104.1 1275122..1275457(-) (sinR) [Bacillus velezensis strain BZR 277]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=505199 IXY24_RS06730 WP_003153104.1 1275122..1275457(-) (sinR) [Bacillus velezensis strain BZR 277]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991