Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IXY24_RS01820 Genome accession   NZ_CP064845
Coordinates   345252..345941 (+) Length   229 a.a.
NCBI ID   WP_197738786.1    Uniprot ID   -
Organism   Bacillus velezensis strain BZR 277     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340252..350941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXY24_RS01795 (IXY24_01780) degS 340536..341699 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  IXY24_RS01800 (IXY24_01785) degU 341776..342465 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IXY24_RS01805 (IXY24_01790) - 342563..343411 (+) 849 WP_003151387.1 DegV family protein -
  IXY24_RS01810 (IXY24_01795) comFA 343519..344904 (+) 1386 WP_025853539.1 DEAD/DEAH box helicase Machinery gene
  IXY24_RS01815 (IXY24_01800) - 344962..345246 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  IXY24_RS01820 (IXY24_01805) comFC 345252..345941 (+) 690 WP_197738786.1 phosphoribosyltransferase family protein Machinery gene
  IXY24_RS01825 (IXY24_01810) - 346015..346434 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  IXY24_RS01830 (IXY24_01815) flgM 346504..346770 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  IXY24_RS01835 (IXY24_01820) - 346785..347267 (+) 483 WP_003151394.1 flagellar protein FlgN -
  IXY24_RS01840 (IXY24_01825) flgK 347283..348800 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  IXY24_RS01845 (IXY24_01830) flgL 348812..349729 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  IXY24_RS01850 (IXY24_01835) - 349820..350389 (+) 570 WP_007407476.1 DUF6470 family protein -
  IXY24_RS01855 (IXY24_01840) fliW 350419..350850 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25249.91 Da        Isoelectric Point: 8.4880

>NTDB_id=505174 IXY24_RS01820 WP_197738786.1 345252..345941(+) (comFC) [Bacillus velezensis strain BZR 277]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=505174 IXY24_RS01820 WP_197738786.1 345252..345941(+) (comFC) [Bacillus velezensis strain BZR 277]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603