Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   KQ257_RS09525 Genome accession   NZ_CP076817
Coordinates   1954582..1957416 (+) Length   944 a.a.
NCBI ID   WP_046693087.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC24137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1949582..1962416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS09495 (KQ257_09460) - 1949820..1950902 (-) 1083 WP_000680211.1 DUF475 domain-containing protein -
  KQ257_RS09500 (KQ257_09465) tenA 1951165..1951839 (+) 675 WP_000899418.1 thiaminase II -
  KQ257_RS09505 (KQ257_09470) - 1951889..1952230 (-) 342 WP_000263330.1 GlpM family protein -
  KQ257_RS09510 (KQ257_09475) - 1952283..1952636 (-) 354 WP_000580165.1 DUF1304 domain-containing protein -
  KQ257_RS09515 (KQ257_09480) - 1952702..1953679 (-) 978 WP_046693088.1 zinc-binding dehydrogenase -
  KQ257_RS09520 (KQ257_09485) - 1953683..1954285 (-) 603 WP_000826320.1 TetR/AcrR family transcriptional regulator -
  KQ257_RS09525 (KQ257_09490) uvrA 1954582..1957416 (+) 2835 WP_046693087.1 excinuclease ABC subunit UvrA Machinery gene
  KQ257_RS09530 (KQ257_09495) - 1957450..1959156 (-) 1707 WP_046693086.1 GGDEF domain-containing protein -
  KQ257_RS09535 (KQ257_09500) omp33-36 1960149..1961048 (+) 900 WP_000733005.1 porin Omp33-36 -

Sequence


Protein


Download         Length: 944 a.a.        Molecular weight: 104398.75 Da        Isoelectric Point: 6.5117

>NTDB_id=505145 KQ257_RS09525 WP_046693087.1 1954582..1957416(+) (uvrA) [Acinetobacter baumannii strain UC24137]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKNLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
GEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSPEKLIPNPELAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQGINLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYDELAKHADSLTGQYLSGKLKIEVPKQRTQPPKPEEKIKLSGAAGHNLKNVDLTIPLGIMICV
TGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIHRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGMIIAEGTPEQVAEVEISHTGRFLKPMLKQ

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=505145 KQ257_RS09525 WP_046693087.1 1954582..1957416(+) (uvrA) [Acinetobacter baumannii strain UC24137]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGCACCCATAACTTAAAAAATGTGTCACTCGATATTCCACGCGACAA
ATTTGTGGTAATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTTGATACCTTGTATGCCGAAGGACAGCGCC
GTTACGTCGAATCACTTTCAGCGTATGCCCGCCAGTTCTTATCGCAAATGGAAAAGCCTGAAGTCGACTCGATTGAAGGT
TTGTCACCAGCGATTGCCATTGAGCAAAAGTCTACCAGTCATAACCCACGTTCAACCGTTGGTACGATTACCGAAATTTA
TGACTATTTGCGTCTGCTTTATGCACGTGTCGGTACGCCTTATTGCCCTGAACACGACTTACCTATGGTTGCGCAAACTG
TTTCTGAAATGGTCGATGCGGTAAAGAACCTTGAGGAAGGTACAGCACTTATGTTGCTTGCCCCTGTTGTTCGTGAGCGT
AAAGGTGAATACAGCAACTTGTTCGAACAACTACAAGGTCAAGGTTTTGTTCGTGCGCGTGTTGATGGTGAAATCATTGA
TATTGATACACCACCAGAACTCGACAAAAAGAAAAAGCATACCATTGAAGTCGTTGTTGACCGCTTTAAAGTACGTGATG
ACTTAGGCAACCGTATTGCTGAATCATTTGAAACTGCACTGCGTTTAGGTGGTGATATTGCCGTTTTATCATGGATGAAT
GGCGAACACCCAGATCGCGTTTTTTCTGCAAAACACTCATGCCCTGAATGTGATCGCGCAGTCGCAGAGCTTGAGCCACG
TTTATTTTCATTTAACAACCCGTTTGGTGCGTGCCCTGTCTGTGATGGCTTAGGTACACGTAGCCATTTTAGTCCTGAAA
AACTCATTCCTAACCCTGAGCTGGCAATTAGTGAAGGTGCTATTCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCATTTCGGTTTTCAACTTGATACACCTTGGAATCAGTTAGATAAAGACACGCAAAAGAA
ATTCTTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAACGCGGCCGTAAACATACACGCGTGCAAC
CGTTTGAAGGAATTTTGCCACACCTTGAGCGTCGCTATCGTGAAACTGAAAGTAACTATGTACGTGATGATTTAGCACAA
TATTTATCTAACGCAGCGTGTGATGCATGTGGCGGTTCACGTCTCAATGAAATTTCACGTCATGTTCGTGTAAAAGATAA
AACCATTGCCGACATTACCCGCATGTCGATTGGAGATGCCGAAAGTTACTATCAAGGTATAAACCTTGAAGGTGCCAAAG
GTGAAATTGCAGATAAAATCTTTAAAGAGATTCGTGAGCGTTTACATTTCTTGGTGAGTGTTGGCCTGAACTATTTAAGT
CTGGCTCGCTCTGCCGAAACACTATCGGGTGGTGAAGCCCAGCGTATCCGTCTAGCTTCGCAAATTGGTGCAGGTTTGAT
GGGTGTCATGTACGTCCTTGATGAACCATCAATTGGTCTCCATCAACGTGATAATGATCGTTTATTACAAACGCTAATTC
GCTTACGTGATTTGGGCAATACGGTATTAGTCGTTGAACATGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCGGGTGCTGGCGTGCATGGTGGTGTTGTCATTGCTGAAGGTACGTATGATGAGCTGGCTAAACATGCCGACTC
GCTCACAGGTCAATATCTTTCAGGCAAACTCAAAATTGAAGTGCCAAAACAGCGAACTCAACCACCTAAACCTGAAGAAA
AAATTAAACTTTCAGGTGCAGCGGGTCATAACTTAAAAAATGTCGATTTAACCATCCCACTTGGCATTATGATTTGTGTC
ACGGGTGTTTCAGGTTCAGGTAAATCAACACTGATTAACCGTACGTTACTCCCACTGGCTGCAACACAACTTAATGGTGC
AACGACCTTAACCGCTGAAAAGTTTGATTCAATTGATGGTCTTCAACATTTAGATAAAGTCGTTGATATTGACCAAAGCC
CAATTGGCCGTACACCGCGCTCTAACCCAGCGACCTATACGGGACTATTTACACCAATTCGTGAATTATTTGCTCAAACC
CCAGAAGCGAAAGCTCGTGGTTATAGTGCGGGTCGTTTCTCGTTTAACGTAAAAGGCGGACGCTGCGAAGCGTGTGAAGG
CGACGGTATGATTAAAGTCGCAATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCATGTCATGGCAAACGTTATA
ACCGTGAAACACTTGAAGTCGGTTATAAAGGCAAAAACATTTCTGATGTTTTAGAAATGACGGTTGAAGATGCTGCTGAG
TTCTTTAGTGCTATTCCAGTTATTCACCGCCGCTTAGAAACCTTAACTCAGGTTGGCTTAGGCTATATTCGTTTAGGTCA
GGCGGCTACTACTTTATCGGGTGGTGAAGCACAGCGTGTCAAACTGGCTCGTGAGTTAGCGAAACGTGATACGGGTAAAA
CGCTTTATATCTTGGATGAACCAACAACAGGTCTGCATTTCCATGATATTGCCAAGTTACTCGATATTTTGCATGAGCTA
CGCAACAAGGGTAATACCATTGTGGTGATTGAACATAACCTTGATGTCATTAAAACAGCAGACTGGGTGGTCGACTTAGG
TCCAGAAGGTGGTTCGGGCGGTGGTATGATCATTGCCGAAGGTACACCTGAACAAGTAGCCGAGGTTGAAATTTCCCATA
CTGGCCGCTTCTTGAAACCGATGTTGAAACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.356

100

0.564

  uvrA Streptococcus pneumoniae TIGR4

56.356

100

0.564

  uvrA Streptococcus pneumoniae D39

56.356

100

0.564