Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KQ256_RS09930 Genome accession   NZ_CP076814
Coordinates   2053453..2054088 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain UC21460     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2048453..2059088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ256_RS09905 (KQ256_09940) - 2048509..2049489 (-) 981 WP_004747384.1 DNA polymerase III, delta' subunit -
  KQ256_RS09910 (KQ256_09945) kdsB 2049501..2050262 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KQ256_RS09915 (KQ256_09950) lpxK 2050272..2051282 (-) 1011 WP_000050454.1 tetraacyldisaccharide 4'-kinase -
  KQ256_RS09920 (KQ256_09955) msbA 2051285..2053012 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  KQ256_RS09925 (KQ256_09960) - 2053009..2053437 (-) 429 WP_000669683.1 biopolymer transporter ExbD -
  KQ256_RS09930 (KQ256_09965) exbB 2053453..2054088 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KQ256_RS09935 (KQ256_09970) - 2054138..2055025 (-) 888 WP_004747388.1 ParB/RepB/Spo0J family partition protein -
  KQ256_RS09940 (KQ256_09975) - 2055022..2055804 (-) 783 WP_000057212.1 ParA family protein -
  KQ256_RS09945 (KQ256_09980) rsmG 2055826..2056458 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KQ256_RS09950 (KQ256_09985) murU 2056546..2057235 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  KQ256_RS09955 (KQ256_09990) - 2057235..2058248 (-) 1014 WP_001096106.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=505069 KQ256_RS09930 WP_000264037.1 2053453..2054088(-) (exbB) [Acinetobacter baumannii strain UC21460]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=505069 KQ256_RS09930 WP_000264037.1 2053453..2054088(-) (exbB) [Acinetobacter baumannii strain UC21460]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393