Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   KQ253_RS17140 Genome accession   NZ_CP076812
Coordinates   3523447..3523773 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain UC23022     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3518447..3528773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS17110 (KQ253_17035) - 3518938..3519705 (+) 768 WP_000897411.1 uroporphyrinogen-III synthase -
  KQ253_RS17115 (KQ253_17040) - 3519714..3520553 (+) 840 WP_001230192.1 hypothetical protein -
  KQ253_RS17120 (KQ253_17045) - 3520563..3521756 (+) 1194 WP_000681770.1 hypothetical protein -
  KQ253_RS17125 (KQ253_17050) - 3521764..3521895 (+) 132 Protein_3352 thioesterase family protein -
  KQ253_RS17130 (KQ253_17055) - 3521952..3522884 (+) 933 WP_001043692.1 IS5-like element ISAba13 family transposase -
  KQ253_RS17135 (KQ253_17060) - 3522938..3523252 (+) 315 Protein_3354 thioesterase family protein -
  KQ253_RS17140 (KQ253_17065) hns 3523447..3523773 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  KQ253_RS17145 (KQ253_17070) gspN 3524106..3524849 (+) 744 WP_000730343.1 type II secretion system protein N -
  KQ253_RS17150 (KQ253_17075) - 3524849..3525685 (+) 837 WP_000870031.1 type II secretion system protein N -
  KQ253_RS17155 (KQ253_17080) gspD 3525727..3527997 (+) 2271 WP_024437337.1 type II secretion system secretin GspD -
  KQ253_RS17160 (KQ253_17085) - 3528038..3528667 (+) 630 WP_000219973.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=505010 KQ253_RS17140 WP_000801427.1 3523447..3523773(+) (hns) [Acinetobacter baumannii strain UC23022]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=505010 KQ253_RS17140 WP_000801427.1 3523447..3523773(+) (hns) [Acinetobacter baumannii strain UC23022]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1