Detailed information NTG0050501

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SII_RS04175
• Genome accession: NC_022237
• Coordinates: 830875..831987 (-)
• Length: 370 a.a.
• NCBI ID: WP_020998656.1
• Uniprot ID: -
• Organism: Streptococcus intermedius C270
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 825875..836987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SII_RS04150 (SII_0816)	msrB	826475..827584 (-)	1110	WP_009568604.1	peptide-methionine (R)-S-oxide reductase MsrB	-
SII_RS04155 (SII_0817)	-	827597..828181 (-)	585	WP_009568603.1	redoxin family protein	-
SII_RS04160 (SII_0818)	ccdA2	828198..828908 (-)	711	WP_020998654.1	thiol-disulfide oxidoreductase-associated membrane protein CcdA2	-
SII_RS04165 (SII_0819)	brnQ	829049..830377 (-)	1329	WP_020998655.1	branched-chain amino acid transport system II carrier protein	-
SII_RS04170 (SII_0820)	-	830528..830857 (-)	330	WP_003072745.1	metal-sulfur cluster assembly factor	-
SII_RS04175 (SII_0821)	rpoS	830875..831987 (-)	1113	WP_020998656.1	RNA polymerase sigma factor RpoD	Regulator
SII_RS04180 (SII_0822)	dnaG	831990..833765 (-)	1776	WP_327083110.1	DNA primase	-
SII_RS04185 (SII_0823)	mscL	833926..834303 (+)	378	WP_003072752.1	large conductance mechanosensitive channel protein MscL	-
SII_RS04190 (SII_0824)	-	834547..835863 (+)	1317	WP_020998658.1	FAD-containing oxidoreductase	-
SII_RS04195 (SII_0825)	-	835923..836666 (-)	744	WP_020998659.1	class A sortase	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42424.08 Da
• Isoelectric Point: 4.4553

>NTDB_id=50501 SII_RS04175 WP_020998656.1 830875..831987(-) (rpoS) [Streptococcus intermedius C270]
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDQLVIPFTLNADGIEDLLQRIQDAGIAITDKEGNPSERVLNTEEEE
VELTDEELIGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=50501 SII_RS04175 WP_020998656.1 830875..831987(-) (rpoS) [Streptococcus intermedius C270]
ATGGCTACAAAACAAAAAGAAGTAACAACTTTTGATGTTCAAGTTGCAGAATTTATTCGCAACCATAAAAAAACTGGTAC
AGCAACCGATGATGAAATCAATGATCAGCTAGTCATTCCATTTACTTTAAATGCTGATGGTATTGAGGATCTTCTTCAAC
GGATTCAAGATGCAGGGATTGCTATTACAGATAAAGAAGGAAATCCAAGTGAACGAGTTTTAAATACAGAGGAAGAAGAA
GTTGAATTAACAGATGAGGAATTAATTGGCAGTAATTCTGCTAAAGTGAATGATCCTGTCCGTATGTATTTAAAAGAAAT
TGGCGTTGTTCCACTATTGACCAATGAAGAAGAGCAAGAATTAGCTGTTCTTGTGGAGCAAGGCGATTTGGAAGCAAAAC
AGCGTTTAGCGGAAGCTAATTTGCGATTGGTTGTTTCCATTGCAAAACGCTATGTTGGGCGCGGTATGCAGTTTCTTGAC
TTGATCCAAGAAGGAAACATGGGATTGATGAAAGCAGTTGATAAATTTGACTATACCAAAGGTTTTAAATTTTCAACCTA
TGCTACTTGGTGGATTCGTCAAGCGATTACTCGTGCAATTGCCGATCAAGCTCGTACAATTCGAATTCCGGTTCATATGG
TGGAAACAATCAATAAATTAGTACGGGAACAACGCAATCTTTTACAGGAATTGGGGCAAGATCCCACACCGGAGCAAATT
GCTGAACGCATGGATATGACACCGGATAAAGTCCGCGAAATCTTGAAAATTGCACAGGAACCAGTATCTCTTGAAACGCC
TATTGGAGAAGAAGATGACAGTCATTTAGGCGATTTTATCGAAGACGAGGTCATTGAAAACCCAGTCGATTATACAACAC
GTATCGTCCTGCGTGAGCAATTAGATGAGGTTCTCGATACATTAACAGACCGTGAAGAAAATGTATTACGTTTGCGTTTC
GGTTTAGATGATGGAAAGATGCGTACACTCGAAGATGTTGGAAAAGTCTTTAACGTAACTCGTGAACGAATTCGACAAAT
CGAGGCAAAAGCTCTGCGTAAATTACGTCATCCTAGTCGTAGCAAACCATTGCGTGATTTTATTGAGGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.575	78.919	0.368