Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPSH417_RS06625 Genome accession   NC_017739
Coordinates   1374499..1375812 (-) Length   437 a.a.
NCBI ID   WP_000653538.1    Uniprot ID   -
Organism   Helicobacter pylori Shi417     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1369499..1380812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH417_RS06595 (HPSH417_06660) nadC 1369962..1370783 (-) 822 WP_000404030.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPSH417_RS06600 (HPSH417_06665) nadA 1370783..1371793 (-) 1011 WP_001141817.1 quinolinate synthase NadA -
  HPSH417_RS06605 (HPSH417_06670) - 1371783..1372586 (-) 804 WP_000561117.1 phosphatidylserine decarboxylase -
  HPSH417_RS06610 (HPSH417_06675) - 1372583..1373086 (-) 504 WP_000953080.1 DUF6115 domain-containing protein -
  HPSH417_RS06615 (HPSH417_06680) - 1373099..1373593 (-) 495 WP_014662023.1 hypothetical protein -
  HPSH417_RS06620 (HPSH417_06685) mqnP 1373586..1374470 (-) 885 WP_000913959.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPSH417_RS06625 (HPSH417_06690) comEC/comE3 1374499..1375812 (-) 1314 WP_000653538.1 ComEC/Rec2 family competence protein Machinery gene
  HPSH417_RS06630 (HPSH417_06695) - 1375809..1377275 (-) 1467 WP_000349791.1 replicative DNA helicase -
  HPSH417_RS06635 (HPSH417_06700) - 1377295..1378689 (-) 1395 WP_000954076.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPSH417_RS06640 (HPSH417_06705) crdS 1378692..1379894 (-) 1203 WP_080024644.1 copper-sensing histidine kinase CrdS -
  HPSH417_RS06645 (HPSH417_06710) crdR 1379860..1380501 (-) 642 WP_001169813.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50163.16 Da        Isoelectric Point: 9.8860

>NTDB_id=50497 HPSH417_RS06625 WP_000653538.1 1374499..1375812(-) (comEC/comE3) [Helicobacter pylori Shi417]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=50497 HPSH417_RS06625 WP_000653538.1 1374499..1375812(-) (comEC/comE3) [Helicobacter pylori Shi417]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTAAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCTGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment