Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KQ253_RS04025 Genome accession   NZ_CP076812
Coordinates   831837..832472 (+) Length   211 a.a.
NCBI ID   WP_024437313.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC23022     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 826837..837472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS04000 (KQ253_03960) - 827677..828690 (+) 1014 WP_001097113.1 phosphotransferase -
  KQ253_RS04005 (KQ253_03965) murU 828690..829379 (+) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  KQ253_RS04010 (KQ253_03970) rsmG 829467..830099 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KQ253_RS04015 (KQ253_03975) - 830121..830903 (+) 783 WP_000057217.1 ParA family protein -
  KQ253_RS04020 (KQ253_03980) - 830900..831787 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  KQ253_RS04025 (KQ253_03985) exbB 831837..832472 (+) 636 WP_024437313.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KQ253_RS04030 (KQ253_03990) - 832488..832916 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  KQ253_RS04035 (KQ253_03995) msbA 832913..834640 (+) 1728 WP_001070723.1 lipid A export permease/ATP-binding protein MsbA -
  KQ253_RS04040 (KQ253_04000) lpxK 834643..835653 (+) 1011 WP_000050466.1 tetraacyldisaccharide 4'-kinase -
  KQ253_RS04045 (KQ253_04005) kdsB 835663..836424 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KQ253_RS04050 (KQ253_04010) - 836436..837416 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23232.12 Da        Isoelectric Point: 6.4861

>NTDB_id=504959 KQ253_RS04025 WP_024437313.1 831837..832472(+) (exbB) [Acinetobacter baumannii strain UC23022]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASFFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=504959 KQ253_RS04025 WP_024437313.1 831837..832472(+) (exbB) [Acinetobacter baumannii strain UC23022]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTGTTAATGAATGATGGTAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTTTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393