Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IIE09_RS04825 Genome accession   NZ_CP064825
Coordinates   1018459..1019088 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli UTI89     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013459..1024088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE09_RS04805 ycbZ 1013859..1015619 (-) 1761 WP_000156501.1 Lon protease family protein -
  IIE09_RS04810 matP 1015805..1016257 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  IIE09_RS04815 ompA 1016335..1017375 (-) 1041 WP_001350588.1 porin OmpA -
  IIE09_RS04820 sulA 1017731..1018240 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  IIE09_RS04825 sxy/tfoX 1018459..1019088 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IIE09_RS04830 yccS 1019051..1021213 (-) 2163 WP_000875041.1 YccS family putative transporter -
  IIE09_RS04835 yccF 1021223..1021669 (-) 447 WP_001261236.1 YccF domain-containing protein -
  IIE09_RS04840 helD 1021792..1023846 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=504946 IIE09_RS04825 WP_000839136.1 1018459..1019088(+) (sxy/tfoX) [Escherichia coli UTI89]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=504946 IIE09_RS04825 WP_000839136.1 1018459..1019088(+) (sxy/tfoX) [Escherichia coli UTI89]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99