Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ITP52_RS20975 Genome accession   NZ_CP064818
Coordinates   4084242..4084862 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4079242..4089862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS20955 (ITP52_20955) dnaD 4079528..4080226 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  ITP52_RS20960 (ITP52_20960) nth 4080245..4080904 (+) 660 WP_009967580.1 endonuclease III -
  ITP52_RS20965 (ITP52_20965) ypoC 4080901..4081395 (+) 495 WP_041849962.1 YpoC family protein -
  ITP52_RS20970 (ITP52_20970) ponA 4081470..4084220 (-) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  ITP52_RS20975 (ITP52_20975) recU 4084242..4084862 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ITP52_RS20980 (ITP52_20980) yppC 4084903..4085865 (+) 963 WP_041849960.1 DUF2515 domain-containing protein -
  ITP52_RS20985 (ITP52_20985) sspM 4085890..4085994 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ITP52_RS20990 (ITP52_20990) yppD 4086193..4086438 (+) 246 WP_041849959.1 DUF5446 family protein -
  ITP52_RS20995 (ITP52_20995) yppE 4086484..4086855 (+) 372 WP_021481525.1 YppE family protein -
  ITP52_RS21000 (ITP52_21000) yppF 4086894..4087082 (-) 189 WP_003230690.1 YppF family protein -
  ITP52_RS21005 (ITP52_21005) sppG 4087270..4087647 (+) 378 WP_004398696.1 YppG family protein -
  ITP52_RS21010 (ITP52_21010) ypqA 4087668..4088087 (-) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  ITP52_RS21015 (ITP52_21015) ptsA 4088225..4088731 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=504942 ITP52_RS20975 WP_004399067.1 4084242..4084862(-) (recU) [Bacillus subtilis strain SH1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=504942 ITP52_RS20975 WP_004399067.1 4084242..4084862(-) (recU) [Bacillus subtilis strain SH1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1