Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ITP52_RS20000 Genome accession   NZ_CP064818
Coordinates   3908165..3908968 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3903165..3913968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS19980 (ITP52_19980) yqxC 3903275..3904120 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  ITP52_RS19985 (ITP52_19985) argR 3904218..3904667 (+) 450 WP_003230265.1 arginine repressor ArgR -
  ITP52_RS19990 (ITP52_19990) recN 3904704..3906434 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  ITP52_RS19995 (ITP52_19995) spoIVB 3906609..3907889 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  ITP52_RS20000 (ITP52_20000) spo0A 3908165..3908968 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ITP52_RS20005 (ITP52_20005) yqiG 3909433..3910551 (-) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  ITP52_RS20010 (ITP52_20010) - 3910624..3910776 (-) 153 WP_014480226.1 hypothetical protein -
  ITP52_RS20015 (ITP52_20015) yqiH 3911084..3911377 (+) 294 WP_003230284.1 lipoprotein -
  ITP52_RS20020 (ITP52_20020) yqiI 3911392..3912012 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  ITP52_RS20025 (ITP52_20025) glpQB 3912091..3912822 (+) 732 WP_041850009.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=504941 ITP52_RS20000 WP_003226427.1 3908165..3908968(+) (spo0A) [Bacillus subtilis strain SH1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=504941 ITP52_RS20000 WP_003226427.1 3908165..3908968(+) (spo0A) [Bacillus subtilis strain SH1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1