Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ITP52_RS19475 Genome accession   NZ_CP064818
Coordinates   3818310..3819077 (+) Length   255 a.a.
NCBI ID   WP_041850024.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3813310..3824077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS19445 (ITP52_19445) pgpH 3813606..3815741 (+) 2136 WP_015251683.1 cyclic-di-AMP phosphodiesterase PgpH -
  ITP52_RS19450 (ITP52_19450) ybeY 3815742..3816215 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ITP52_RS19455 (ITP52_19455) unpK 3816196..3816567 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  ITP52_RS19460 (ITP52_19460) - 3816686..3817096 (+) 411 WP_003230049.1 cytidine deaminase -
  ITP52_RS19465 (ITP52_19465) era 3817077..3817982 (+) 906 WP_003230051.1 GTPase Era -
  ITP52_RS19470 (ITP52_19470) yqzL 3818130..3818273 (+) 144 WP_003230053.1 YqzL family protein -
  ITP52_RS19475 (ITP52_19475) recO 3818310..3819077 (+) 768 WP_041850024.1 DNA repair protein RecO Machinery gene
  ITP52_RS19480 (ITP52_19480) glyQ 3819374..3820261 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ITP52_RS19485 (ITP52_19485) glyS 3820254..3822293 (+) 2040 WP_032722129.1 glycine--tRNA ligase subunit beta -
  ITP52_RS19490 (ITP52_19490) ccpN 3822426..3823064 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  ITP52_RS19495 (ITP52_19495) ppsR 3823090..3823902 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29376.06 Da        Isoelectric Point: 8.3080

>NTDB_id=504930 ITP52_RS19475 WP_041850024.1 3818310..3819077(+) (recO) [Bacillus subtilis strain SH1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHFMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=504930 ITP52_RS19475 WP_041850024.1 3818310..3819077(+) (recO) [Bacillus subtilis strain SH1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTAGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTAAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATTTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992