Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KQ254_RS11935 Genome accession   NZ_CP076807
Coordinates   2491428..2493689 (-) Length   753 a.a.
NCBI ID   WP_017725627.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2486428..2498689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS11925 (KQ254_11885) adeA 2486984..2488174 (+) 1191 WP_017725629.1 multidrug efflux RND transporter periplasmic adaptor subunit AdeA -
  KQ254_RS11930 (KQ254_11890) adeB 2488171..2491281 (+) 3111 WP_017725628.1 multidrug efflux RND transporter permease subunit AdeB -
  KQ254_RS11935 (KQ254_11895) uvrA 2491428..2493689 (-) 2262 WP_017725627.1 excinuclease ABC subunit UvrA Machinery gene
  KQ254_RS11940 (KQ254_11900) - 2494995..2495285 (+) 291 WP_000794349.1 hypothetical protein -
  KQ254_RS11945 (KQ254_11905) - 2495774..2496307 (+) 534 WP_000731819.1 fimbrial protein -
  KQ254_RS11950 (KQ254_11910) - 2496395..2497129 (+) 735 WP_017725750.1 fimbria/pilus periplasmic chaperone -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 84625.11 Da        Isoelectric Point: 8.2396

>NTDB_id=504929 KQ254_RS11935 WP_017725627.1 2491428..2493689(-) (uvrA) [Acinetobacter baumannii strain UC20804]
MTKRTINIYGARQNNLKIISLKIPKHKIVVFTGVSGSGKSSLVFETIGAEAQRQINETQDSFVRNRLQHFGVTDVDKIEN
LNVPVIINQKPLTGNIRSTVATITDIYANLRLLFSRMGEPFVGYSNVFSFNHPNGMCPQCEGIGIEQTIDIYKILDLDKS
LNEEGAIDFPTYQPTAWRWTRYADSGYFDLDKKLKDYSEKEWNLFLYAPQHKPLNPTSKWRKTALYEGLIPRFERNFLKG
EAQERNRYRNKLERIITIKECSLCKGQRLNQKSLSCKINGKNIAKCTALSVSSLLEFLESIKSEKFETVLHEIKNKLNNL
NLVGLSYLNLNRVSNTLSGGESQRIKMVKHLGNSLVDLLYIFDEPSVGLHPKDLDNIIKIIQKIRDKGNSVLLVEHDPDL
IRTADHVVDMGPLSGINGGEIIYQGTFEELKNSSGLTGAFFRRPNTYKKEPRMGNEWISIKNAHLFNLKNIDVDIPKNCL
TVITGVAGSGKSTLISKVLPQQYPETKVVDQSAITASIRSNLLTYLDLLDPIRQLFAKTNKVSAKLFSFNSEGACPQCKG
SGIERIELAFLDDIEMTCDVCHGSGYAPEVLKYLYKDKNIAEILKMTVAEASNFFEDRILQQQFNSLMSLGLDYIAIGQR
LNTFSGGERQRLKLTKQINETDNIFVLDEPSTGLHPSDTEKLISLLNNLVEKGNTIIVIEHNLDIISQADWIVDIGPLAG
DKGGELVFSGTVSGLLSAEKSLTGYYLKKYLEL

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=504929 KQ254_RS11935 WP_017725627.1 2491428..2493689(-) (uvrA) [Acinetobacter baumannii strain UC20804]
ATGACTAAAAGAACAATAAATATTTATGGTGCCAGACAAAATAACCTTAAAATTATTTCATTGAAGATTCCTAAACATAA
AATCGTTGTCTTTACTGGAGTCTCCGGTTCAGGTAAATCTTCTTTAGTTTTCGAGACTATTGGCGCAGAAGCTCAAAGAC
AAATTAATGAAACTCAAGATAGTTTTGTACGTAATCGCTTGCAACATTTTGGTGTTACTGACGTTGATAAAATTGAAAAT
TTAAATGTACCTGTGATTATTAATCAAAAACCTTTAACGGGCAATATTCGCTCAACTGTTGCAACAATTACAGATATTTA
TGCCAATCTTCGCTTGTTATTTTCACGTATGGGTGAGCCGTTTGTTGGATACTCCAATGTCTTTTCTTTTAATCACCCAA
ATGGCATGTGTCCACAATGCGAAGGTATTGGAATCGAGCAAACAATTGATATTTACAAAATATTAGATTTAGATAAATCC
TTAAATGAAGAAGGTGCTATAGACTTCCCTACTTATCAACCTACAGCATGGCGTTGGACGCGATATGCAGATTCAGGTTA
CTTTGATTTAGATAAAAAATTAAAAGATTATAGTGAAAAAGAATGGAACTTATTTTTGTATGCTCCTCAGCACAAGCCTT
TAAACCCGACAAGTAAATGGAGAAAAACCGCACTTTATGAAGGACTAATTCCCAGATTTGAGCGTAACTTTTTAAAAGGT
GAAGCACAGGAAAGAAATCGTTATAGAAATAAACTTGAGCGAATTATTACAATCAAAGAATGCTCCTTATGTAAGGGACA
ACGGCTAAATCAAAAATCCTTATCTTGTAAAATTAATGGTAAAAATATTGCGAAATGTACGGCCCTATCCGTATCAAGTC
TTTTAGAGTTTCTCGAATCGATAAAAAGTGAAAAATTTGAAACCGTTTTGCACGAAATAAAAAATAAACTCAATAACTTA
AATCTCGTTGGACTCAGCTATTTAAACCTTAACCGTGTCAGCAATACATTGTCGGGAGGAGAATCACAACGAATTAAAAT
GGTTAAACATTTGGGTAATAGTCTGGTTGACCTACTCTATATTTTTGATGAACCAAGTGTTGGCCTGCACCCCAAAGATT
TAGATAATATTATTAAAATTATTCAAAAAATTAGAGATAAGGGAAATAGTGTTTTATTGGTTGAGCATGATCCTGATCTT
ATTAGGACAGCTGATCATGTCGTTGATATGGGGCCTCTTTCTGGTATCAACGGCGGTGAAATTATTTACCAAGGAACTTT
TGAAGAATTAAAAAATTCATCAGGTTTAACAGGTGCGTTTTTTAGAAGGCCAAATACCTATAAGAAAGAACCACGTATGG
GCAATGAATGGATTTCAATTAAAAATGCTCATTTATTCAATTTAAAAAATATTGATGTCGACATTCCTAAGAACTGTCTA
ACCGTTATTACAGGAGTCGCTGGTTCAGGAAAAAGCACATTAATAAGTAAAGTATTACCACAACAATATCCTGAAACAAA
AGTTGTTGATCAATCTGCAATTACTGCAAGTATTCGCTCAAATTTATTGACCTATCTTGACCTTCTTGATCCGATTCGTC
AGCTATTTGCAAAAACAAATAAAGTAAGTGCCAAGCTCTTTAGTTTTAATAGTGAAGGTGCTTGCCCTCAATGTAAAGGA
TCTGGTATCGAAAGAATAGAACTTGCATTTTTAGATGATATTGAAATGACATGTGATGTTTGTCATGGTTCTGGATATGC
ACCTGAAGTTTTAAAATATCTTTATAAAGATAAAAATATAGCTGAAATTTTAAAAATGACGGTTGCAGAAGCAAGCAACT
TTTTTGAAGATCGAATTTTACAGCAACAATTTAATTCTTTGATGAGTTTGGGGCTAGACTACATTGCAATCGGCCAACGC
TTAAATACATTTTCGGGTGGTGAGCGTCAAAGGTTAAAACTCACAAAACAAATTAATGAAACAGATAATATTTTTGTATT
GGATGAACCGAGTACAGGACTACACCCTTCTGATACTGAAAAACTAATTAGTTTATTAAATAACTTAGTTGAGAAAGGCA
ACACAATCATTGTGATTGAACACAACTTAGACATCATAAGTCAAGCCGACTGGATTGTTGATATTGGTCCTTTGGCGGGT
GACAAAGGTGGTGAATTGGTATTCTCAGGAACTGTTAGCGGTTTGCTTTCAGCAGAAAAATCTTTAACAGGTTATTATTT
GAAAAAATATTTAGAGCTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(468-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

34.917

100

0.361
  uvrA Streptococcus pneumoniae TIGR4

34.917

100

0.361
  uvrA Streptococcus pneumoniae D39

34.917

100

0.361