Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KQ254_RS10965 Genome accession   NZ_CP076807
Coordinates   2280386..2281492 (+) Length   368 a.a.
NCBI ID   WP_017725729.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275386..2286492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS10925 (KQ254_10885) - 2275575..2275898 (+) 324 WP_017725663.1 hypothetical protein -
  KQ254_RS10930 (KQ254_10890) grxD 2275945..2276286 (-) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  KQ254_RS10935 (KQ254_10895) - 2276514..2277722 (+) 1209 WP_000129944.1 aspartate aminotransferase family protein -
  KQ254_RS10940 (KQ254_10900) - 2277773..2278204 (-) 432 WP_000156920.1 CBS domain-containing protein -
  KQ254_RS10945 (KQ254_10905) - 2278345..2278719 (-) 375 WP_001087274.1 DUF2750 domain-containing protein -
  KQ254_RS10950 (KQ254_10910) - 2279043..2279276 (-) 234 WP_000616034.1 hypothetical protein -
  KQ254_RS10955 (KQ254_10915) - 2279492..2279851 (+) 360 WP_000185571.1 hypothetical protein -
  KQ254_RS10960 (KQ254_10920) - 2279952..2280278 (+) 327 WP_000955083.1 hypothetical protein -
  KQ254_RS10965 (KQ254_10925) pilA 2280386..2281492 (+) 1107 WP_017725729.1 signal recognition particle-docking protein FtsY Machinery gene
  KQ254_RS10970 (KQ254_10930) - 2281681..2282277 (+) 597 WP_017725660.1 nitroreductase family protein -
  KQ254_RS10975 (KQ254_10935) - 2282502..2283173 (+) 672 WP_017725659.1 DUF2057 domain-containing protein -
  KQ254_RS10980 (KQ254_10940) - 2283246..2283770 (+) 525 WP_017725658.1 GNAT family N-acetyltransferase -
  KQ254_RS10985 (KQ254_10945) - 2283783..2284082 (-) 300 WP_085916945.1 cyd operon YbgE family protein -
  KQ254_RS10990 (KQ254_10950) cydX 2284083..2284184 (-) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  KQ254_RS10995 (KQ254_10955) cydB 2284198..2285343 (-) 1146 WP_000575152.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39847.66 Da        Isoelectric Point: 5.0746

>NTDB_id=504927 KQ254_RS10965 WP_017725729.1 2280386..2281492(+) (pilA) [Acinetobacter baumannii strain UC20804]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPGQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=504927 KQ254_RS10965 WP_017725729.1 2280386..2281492(+) (pilA) [Acinetobacter baumannii strain UC20804]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTGGTCGAGGCTGCACCTT
CTACAGAACCTGGGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGCCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCTTTGCAAGAAGAGTTGGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTAATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACGACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGACAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451