Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ITP52_RS17920 Genome accession   NZ_CP064818
Coordinates   3555126..3555872 (+) Length   248 a.a.
NCBI ID   WP_080332541.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3550126..3560872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS17905 (ITP52_17905) - 3550353..3550544 (-) 192 WP_003222590.1 hypothetical protein -
  ITP52_RS17910 (ITP52_17910) valS 3550992..3553634 (+) 2643 WP_041850183.1 valine--tRNA ligase -
  ITP52_RS17915 (ITP52_17915) folC 3553694..3554986 (+) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ITP52_RS17920 (ITP52_17920) comC 3555126..3555872 (+) 747 WP_080332541.1 A24 family peptidase Machinery gene
  ITP52_RS17925 (ITP52_17925) spoIIB 3556006..3557004 (+) 999 WP_041850181.1 stage II sporulation protein SpoIIB -
  ITP52_RS17930 (ITP52_17930) maf 3557158..3557727 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ITP52_RS17935 (ITP52_17935) radC 3557764..3558459 (+) 696 WP_041850180.1 DNA repair protein RadC -
  ITP52_RS17940 (ITP52_17940) mreB 3558551..3559564 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ITP52_RS17945 (ITP52_17945) mreC 3559595..3560467 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=504922 ITP52_RS17920 WP_080332541.1 3555126..3555872(+) (comC) [Bacillus subtilis strain SH1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDTWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=504922 ITP52_RS17920 WP_080332541.1 3555126..3555872(+) (comC) [Bacillus subtilis strain SH1]
ATGCTATCCATTCTTTTTATCTTCGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATACCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992