Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ITP52_RS10305 Genome accession   NZ_CP064818
Coordinates   2070409..2070699 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SH1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2065409..2075699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS10290 (ITP52_10290) yabE 2065604..2066917 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  ITP52_RS10295 (ITP52_10295) dayD 2067073..2067840 (-) 768 WP_014475570.1 TatD family hydrolase -
  ITP52_RS10300 (ITP52_10300) metG 2067920..2069914 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  ITP52_RS10305 (ITP52_10305) abrB 2070409..2070699 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  ITP52_RS10310 (ITP52_10310) rsmI 2070748..2071626 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ITP52_RS10315 (ITP52_10315) yazA 2071601..2071900 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  ITP52_RS10320 (ITP52_10320) trmNF 2071887..2072630 (-) 744 WP_003226765.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ITP52_RS10325 (ITP52_10325) yabA 2072689..2073048 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  ITP52_RS10330 (ITP52_10330) ricT 2073063..2073890 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  ITP52_RS10335 (ITP52_10335) holB 2073893..2074882 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  ITP52_RS10340 (ITP52_10340) yaaR 2074894..2075334 (-) 441 WP_009966249.1 YaaR family protein -
  ITP52_RS10345 (ITP52_10345) darA 2075347..2075676 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=504898 ITP52_RS10305 WP_003226760.1 2070409..2070699(+) (abrB) [Bacillus subtilis strain SH1]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=504898 ITP52_RS10305 WP_003226760.1 2070409..2070699(+) (abrB) [Bacillus subtilis strain SH1]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1