Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ITP52_RS06110 Genome accession   NZ_CP064818
Coordinates   1228545..1229339 (-) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1223545..1234339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS06075 (ITP52_06075) ephM 1224388..1225248 (-) 861 WP_014479220.1 epoxide hydrolase EphM -
  ITP52_RS06080 (ITP52_06080) spdL 1225235..1225567 (-) 333 WP_003242803.1 SdpC immunity protein SpdL -
  ITP52_RS06085 (ITP52_06085) yfhK 1225652..1226170 (-) 519 WP_015252515.1 SH3 domain-containing protein -
  ITP52_RS06090 (ITP52_06090) yfhJ 1226315..1226584 (-) 270 WP_003243789.1 YfhJ family protein -
  ITP52_RS06095 (ITP52_06095) sspK 1226709..1226861 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  ITP52_RS06100 (ITP52_06100) yfhI 1226893..1228086 (-) 1194 WP_003243500.1 MFS transporter -
  ITP52_RS06105 (ITP52_06105) yfhH 1228229..1228543 (-) 315 WP_003244592.1 YfhH family protein -
  ITP52_RS06110 (ITP52_06110) recX 1228545..1229339 (-) 795 WP_029726844.1 recombination regulator RecX Regulator
  ITP52_RS06115 (ITP52_06115) yfhF 1229428..1230339 (+) 912 WP_041851148.1 TIGR01777 family oxidoreductase -
  ITP52_RS06120 (ITP52_06120) yfhE 1230394..1230504 (+) 111 WP_003223230.1 YfhE family protein -
  ITP52_RS06125 (ITP52_06125) yfhD 1230571..1230762 (+) 192 WP_041851149.1 YfhD family protein -
  ITP52_RS06130 (ITP52_06130) yfhC 1230801..1231385 (-) 585 WP_015252518.1 NAD(P)H nitroreductase -
  ITP52_RS06135 (ITP52_06135) yfhB 1231473..1232354 (-) 882 WP_041851150.1 PhzF family phenazine biosynthesis isomerase -
  ITP52_RS06140 (ITP52_06140) sxzA 1232469..1233500 (-) 1032 WP_003233568.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=504888 ITP52_RS06110 WP_029726844.1 1228545..1229339(-) (recX) [Bacillus subtilis strain SH1]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=504888 ITP52_RS06110 WP_029726844.1 1228545..1229339(-) (recX) [Bacillus subtilis strain SH1]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996