Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ITP52_RS05030 Genome accession   NZ_CP064818
Coordinates   1036880..1037458 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031880..1042458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS04995 (ITP52_04995) lepB 1031885..1032391 (-) 507 WP_003233128.1 signal peptidase I -
  ITP52_RS05000 (ITP52_05000) yhjE 1032393..1033016 (-) 624 WP_010886465.1 VTT domain-containing protein -
  ITP52_RS05005 (ITP52_05005) - 1033168..1033539 (+) 372 WP_014476361.1 hypothetical protein -
  ITP52_RS05010 (ITP52_05010) yhjC 1033738..1033938 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ITP52_RS05015 (ITP52_05015) yhjB 1033935..1035404 (+) 1470 WP_029317574.1 sodium:solute symporter -
  ITP52_RS05020 (ITP52_05020) yhjA 1035448..1035717 (-) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  ITP52_RS05025 (ITP52_05025) yhxD 1035934..1036833 (+) 900 WP_041851019.1 SDR family oxidoreductase -
  ITP52_RS05030 (ITP52_05030) comK 1036880..1037458 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  ITP52_RS05035 (ITP52_05035) yhzC 1037751..1037984 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  ITP52_RS05040 (ITP52_05040) yhxC 1038012..1038869 (-) 858 WP_021479616.1 SDR family oxidoreductase -
  ITP52_RS05045 (ITP52_05045) comW 1038981..1040510 (+) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  ITP52_RS05050 (ITP52_05050) hemAT 1040649..1041947 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=504883 ITP52_RS05030 WP_029317573.1 1036880..1037458(-) (comK) [Bacillus subtilis strain SH1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=504883 ITP52_RS05030 WP_029317573.1 1036880..1037458(-) (comK) [Bacillus subtilis strain SH1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995