Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ITP52_RS04570 Genome accession   NZ_CP064818
Coordinates   946247..947200 (-) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain SH1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 941247..952200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS04540 (ITP52_04540) appD 941366..942352 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  ITP52_RS04545 (ITP52_04545) yjaZ 942544..943329 (-) 786 WP_003232967.1 DUF2268 domain-containing protein -
  ITP52_RS04550 (ITP52_04550) fabF 943405..944646 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  ITP52_RS04555 (ITP52_04555) fabH 944669..945607 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  ITP52_RS04560 (ITP52_04560) yjzB 945772..946011 (+) 240 WP_003232972.1 spore coat protein YjzB -
  ITP52_RS04565 (ITP52_04565) comZ 946041..946232 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  ITP52_RS04570 (ITP52_04570) med 946247..947200 (-) 954 WP_003245494.1 transcriptional regulator Med Regulator
  ITP52_RS04575 (ITP52_04575) - 947291..947848 (-) 558 WP_003232974.1 hypothetical protein -
  ITP52_RS04580 (ITP52_04580) - 947930..948664 (-) 735 WP_003245223.1 hypothetical protein -
  ITP52_RS04585 (ITP52_04585) yjzD 948913..949098 (+) 186 WP_003245236.1 DUF2929 domain-containing protein -
  ITP52_RS04590 (ITP52_04590) yjzC 949144..949323 (-) 180 WP_003245356.1 YjzC family protein -
  ITP52_RS04595 (ITP52_04595) argF 949409..950368 (-) 960 WP_003232980.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=504880 ITP52_RS04570 WP_003245494.1 946247..947200(-) (med) [Bacillus subtilis strain SH1]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=504880 ITP52_RS04570 WP_003245494.1 946247..947200(-) (med) [Bacillus subtilis strain SH1]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1