Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ITP52_RS02965 Genome accession   NZ_CP064818
Coordinates   657419..658003 (-) Length   194 a.a.
NCBI ID   WP_014113628.1    Uniprot ID   A0A0D1L215
Organism   Bacillus subtilis strain SH1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 652419..663003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS02940 (ITP52_02940) mobB 652815..653336 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  ITP52_RS02945 (ITP52_02945) glp 653297..654589 (-) 1293 WP_041850879.1 gephyrin-like molybdotransferase Glp -
  ITP52_RS02950 (ITP52_02950) moeB 654607..655626 (-) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  ITP52_RS02955 (ITP52_02955) mobA 655677..656276 (-) 600 WP_021479380.1 molybdenum cofactor guanylyltransferase -
  ITP52_RS02960 (ITP52_02960) cse15 656413..657378 (+) 966 WP_041850880.1 spore protein Cse15 -
  ITP52_RS02965 (ITP52_02965) rok 657419..658003 (-) 585 WP_014113628.1 transcriptional regulator Rok Regulator
  ITP52_RS02970 (ITP52_02970) ykuV 658469..658915 (-) 447 WP_041850881.1 thiol-disulfide oxidoreductase YkuV -
  ITP52_RS02975 (ITP52_02975) ahpA 658985..659527 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  ITP52_RS02980 (ITP52_02980) mscT 659764..660567 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  ITP52_RS02985 (ITP52_02985) ykuS 660604..660849 (-) 246 WP_003232382.1 YkuS family protein -
  ITP52_RS02990 (ITP52_02990) dapI 660911..662034 (-) 1124 Protein_598 N-acetyldiaminopimelate deacetylase -
  ITP52_RS02995 (ITP52_02995) dapD 662104..662814 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22127.12 Da        Isoelectric Point: 9.7036

>NTDB_id=504870 ITP52_RS02965 WP_014113628.1 657419..658003(-) (rok) [Bacillus subtilis strain SH1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESAESANE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=504870 ITP52_RS02965 WP_014113628.1 657419..658003(-) (rok) [Bacillus subtilis strain SH1]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCGAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAACCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTGAATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L215

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

97.423

0.974