Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KQ251_RS14090 Genome accession   NZ_CP076804
Coordinates   2953406..2953768 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain UC24371     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2948406..2958768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ251_RS14080 (KQ251_14010) - 2950684..2952762 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  KQ251_RS14085 (KQ251_14015) - 2952809..2953345 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  KQ251_RS14090 (KQ251_14020) pilH 2953406..2953768 (-) 363 WP_000101096.1 response regulator Machinery gene
  KQ251_RS14095 (KQ251_14025) pilG 2953792..2954175 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  KQ251_RS14100 (KQ251_14030) - 2954458..2955096 (+) 639 WP_002027721.1 hypothetical protein -
  KQ251_RS14105 (KQ251_14035) - 2955157..2956275 (+) 1119 WP_045900330.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=504848 KQ251_RS14090 WP_000101096.1 2953406..2953768(-) (pilH) [Acinetobacter baumannii strain UC24371]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=504848 KQ251_RS14090 WP_000101096.1 2953406..2953768(-) (pilH) [Acinetobacter baumannii strain UC24371]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392