Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IMX31_RS06425 Genome accession   NZ_CP064793
Coordinates   1231872..1232246 (-) Length   124 a.a.
NCBI ID   WP_229754616.1    Uniprot ID   -
Organism   Priestia megaterium strain IGA-FME-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1226872..1237246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX31_RS06405 - 1227443..1227811 (-) 369 WP_195782172.1 winged helix-turn-helix transcriptional regulator -
  IMX31_RS26700 - 1228051..1228227 (+) 177 WP_229754541.1 hypothetical protein -
  IMX31_RS06410 - 1228229..1228570 (+) 342 WP_229754542.1 hypothetical protein -
  IMX31_RS26985 - 1228710..1228835 (+) 126 WP_016765178.1 hypothetical protein -
  IMX31_RS06415 helD 1229079..1231397 (+) 2319 WP_195782173.1 RNA polymerase recycling motor HelD -
  IMX31_RS06420 comJ 1231429..1231836 (-) 408 WP_195782174.1 competence protein ComJ -
  IMX31_RS06425 nucA/comI 1231872..1232246 (-) 375 WP_229754616.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IMX31_RS06430 - 1232692..1232952 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  IMX31_RS06435 - 1233109..1235058 (+) 1950 WP_195782176.1 FUSC family protein -
  IMX31_RS06440 - 1235094..1235912 (-) 819 WP_013058559.1 squalene/phytoene synthase family protein -
  IMX31_RS06445 - 1236238..1236909 (+) 672 WP_195782177.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13675.93 Da        Isoelectric Point: 4.2601

>NTDB_id=504791 IMX31_RS06425 WP_229754616.1 1231872..1232246(-) (nucA/comI) [Priestia megaterium strain IGA-FME-1]
MGHAAFLAPEKTEAEINYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=504791 IMX31_RS06425 WP_229754616.1 1231872..1232246(-) (nucA/comI) [Priestia megaterium strain IGA-FME-1]
ATGGGACATGCGGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAATAAACTATGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGGGAAGAATCGCTGAAAGGATATCCAACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGGGGAGCCGGCTCGTGGGTTGG
AAATCAATTAGAACAGTACCCAGATGGTACGCGCGTACAATTTATCGTCCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645