Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IMX31_RS03660 Genome accession   NZ_CP064793
Coordinates   684882..686609 (+) Length   575 a.a.
NCBI ID   WP_195781877.1    Uniprot ID   -
Organism   Priestia megaterium strain IGA-FME-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 679882..691609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX31_RS03635 - 680079..680312 (+) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -
  IMX31_RS03640 - 680312..681208 (+) 897 WP_195781875.1 polyprenyl synthetase family protein -
  IMX31_RS03645 dxs 681529..683430 (+) 1902 WP_195781876.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IMX31_RS03650 - 683427..684254 (+) 828 WP_057233494.1 TlyA family RNA methyltransferase -
  IMX31_RS03655 ahrC 684416..684865 (+) 450 WP_013059136.1 transcriptional regulator AhrC/ArgR -
  IMX31_RS03660 recN 684882..686609 (+) 1728 WP_195781877.1 DNA repair protein RecN Machinery gene
  IMX31_RS03665 spoIVB 686792..688072 (+) 1281 WP_195781878.1 SpoIVB peptidase -
  IMX31_RS03670 spo0A 688300..689088 (+) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  IMX31_RS03675 - 689480..690811 (-) 1332 WP_195781879.1 peptide MFS transporter -
  IMX31_RS03680 - 691126..691278 (-) 153 WP_080564743.1 YycC family protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64678.21 Da        Isoelectric Point: 4.8290

>NTDB_id=504786 IMX31_RS03660 WP_195781877.1 684882..686609(+) (recN) [Priestia megaterium strain IGA-FME-1]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYADISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKHTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=504786 IMX31_RS03660 WP_195781877.1 684882..686609(+) (recN) [Priestia megaterium strain IGA-FME-1]
TTGTTAGCTGAATTATCCATTAAAAATTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGAAAGTCAATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCAGAGT
TTGTCCGCCACGGAACAGACAGAGCCGAAATTGAAGGGCTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCTAAACAAGTCGGTTTAGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGACATTACGACAAATGGGAAAAGTATTTG
CCGGATCAACGGTAAGCTCGTAACGTTAGCTATCCTACGTGAAGTTGGACAGACGTTAATTGATATACATGGACAGCATG
AACACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTA
ACGGAGTATCGAGAGGTATTTTCTAGGTATACATCGTTAAAAAAACAGTTAGATCAATTAACTGAAAATGAACAGCAGAT
GGCACATCGCCTAGATCTTATTCAATTTCAATTAGATGAAATTAAAGCGGCAAATTTGCAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACTTCACTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTTTAGATTGGGTAGGCGTAGCAATGAATCATACGGAGGATATTTCTTCACTGGAAAAAAACTATGCCGA
TATTTCTGAAATCATTTCATCGAGTTTCTATCAGCTAGAAGACGCGTCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGT
GTAGACGAAATTCTAGAATATGCAGCACAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGTAA
GATCAAAGAGCAGTTAAACAGCGTAGCGCAGGATTTATTAGTAGAAGCTAACAATGTTTCAGCTATTCGAAAAAAACTTG
CTCAAGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTGTATATGGCTAAGACCGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
GTTTTATATTTCTACCAACCCTGGTGAACCGTTAAAGCCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAGAGCATCTTCTCTAAGCATCAAGGTGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCCATTTCCGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
GCAGGTAGCAGCTATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACGTCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCACACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.931

100

0.65