Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   SII_RS00265 Genome accession   NC_022237
Coordinates   44123..46045 (-) Length   640 a.a.
NCBI ID   WP_020998154.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 39123..51045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS00245 (SII_0050) purM 40326..41348 (+) 1023 WP_148290362.1 phosphoribosylformylglycinamidine cyclo-ligase -
  SII_RS00250 (SII_0051) purN 41348..41911 (+) 564 WP_020998151.1 phosphoribosylglycinamide formyltransferase -
  SII_RS00255 (SII_0052) - 41904..42497 (+) 594 WP_020998152.1 hypothetical protein -
  SII_RS00260 (SII_0053) purH 42517..44064 (+) 1548 WP_020998153.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  SII_RS00265 (SII_0054) lytF 44123..46045 (-) 1923 WP_020998154.1 GBS Bsp-like repeat-containing protein Regulator
  SII_RS00270 (SII_0055) purD 46241..47503 (+) 1263 WP_020998155.1 phosphoribosylamine--glycine ligase -
  SII_RS00275 (SII_0056) purE 47802..48290 (+) 489 WP_020998156.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  SII_RS00280 (SII_0057) purK 48277..49371 (+) 1095 WP_020998157.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  SII_RS00285 (SII_0058) - 49381..49608 (+) 228 WP_020998158.1 hypothetical protein -
  SII_RS00290 (SII_0059) - 49642..50457 (+) 816 WP_020998159.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 71448.12 Da        Isoelectric Point: 8.5276

>NTDB_id=50469 SII_RS00265 WP_020998154.1 44123..46045(-) (lytF) [Streptococcus intermedius C270]
MKKYSQLFLLSSAFLSILTAQTTVQASDNTPNSSNPTTLASDVTVNVSGNSVSINYIRSQAQNPYTISHAVWSDENGQDD
LKWYSAPQTSTTVDLSQHSGYGTFHVHTYININGKMIGLNGTTFTLNRPTSQTKITAAGHIGQIHFTRNKDQKNSKIVHA
VWSEENGSDDLNWYDAEQEITKFDFSKHKGYGRYFVDTYENKNGKMIYQSGTTFNLEKPNPTIQTSFPEPGIMDIRIKNV
PETIYKLTVPTWSDKNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGTTVQVRPDQLP
SEEEQKPLFSVENINQEQGTYTVKIKETSKSKSIQSVRAPIWSTTNQSNIKWYTATDNGDGTFSTTFNIRNHQALSGTYI
NHIYVKYKDGSEHSYATDSVSMFAEQIKTKVAVTKRSIYNYEVTVTDAYGDGNIILPTWSEVNGQDDIQWYTATKTGNGI
YKFTIDTQKHTGSGLFHTHVYRNLNGKMIGLTGTSYQVEKPVISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWGNGGD
WATSARRAGFKTGTTPQVGAIICWTDGSYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGVVSYIYPK

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=50469 SII_RS00265 WP_020998154.1 44123..46045(-) (lytF) [Streptococcus intermedius C270]
ATGAAGAAATACAGTCAACTATTTTTACTATCTAGTGCCTTTTTGAGCATCCTTACAGCTCAAACAACCGTTCAAGCTTC
GGATAATACTCCGAACAGTTCAAATCCAACAACTCTTGCTAGCGATGTTACTGTCAATGTTTCTGGCAATAGCGTTTCTA
TCAACTACATACGTTCACAAGCCCAAAACCCCTACACCATTTCCCATGCTGTTTGGTCTGATGAAAATGGGCAAGATGAC
CTTAAATGGTATTCCGCACCTCAAACATCAACAACTGTTGATTTGAGCCAACATTCTGGATACGGTACTTTCCATGTCCA
TACATATATCAACATCAATGGAAAAATGATCGGTTTAAATGGAACGACATTCACTCTGAATAGACCTACTAGTCAAACAA
AAATTACGGCAGCTGGACATATTGGGCAAATTCATTTTACACGCAATAAAGATCAAAAAAATTCTAAAATTGTTCATGCC
GTTTGGTCTGAAGAAAATGGTAGTGATGATCTCAACTGGTACGATGCTGAACAGGAAATAACTAAATTTGACTTTTCCAA
ACACAAGGGTTATGGGAGATATTTTGTAGATACTTATGAAAATAAAAATGGTAAAATGATTTATCAGTCAGGTACCACTT
TTAACCTTGAAAAGCCAAATCCTACCATTCAGACTAGTTTTCCAGAACCTGGCATCATGGATATTCGGATAAAAAATGTC
CCTGAAACAATCTATAAACTTACTGTTCCAACTTGGTCTGATAAAAACGGACAGGATGATCTTCAATGGTATGCAGCTAC
TAAAAATCCTGATGGAAGCTATAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTTATCACATTCATC
TTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAACTACAGTACAAGTTCGTCCCGATCAATTACCT
TCGGAAGAAGAGCAAAAGCCATTATTCTCTGTTGAAAATATCAATCAAGAACAAGGAACATATACGGTCAAAATTAAGGA
AACTTCAAAATCCAAATCCATTCAATCCGTTCGCGCTCCTATTTGGAGTACTACAAATCAGAGTAATATCAAATGGTACA
CAGCCACTGACAATGGAGACGGAACTTTTTCAACAACCTTTAATATCCGCAATCATCAGGCTTTGTCTGGAACCTATATC
AATCATATTTATGTAAAATATAAAGACGGTAGTGAGCATAGTTATGCAACAGATTCGGTTAGCATGTTCGCAGAACAGAT
AAAAACGAAAGTAGCTGTCACGAAACGCTCGATCTACAATTATGAAGTAACAGTGACAGATGCTTATGGAGATGGAAATA
TCATCCTGCCTACCTGGTCTGAAGTCAACGGGCAAGATGATATCCAGTGGTACACAGCTACTAAAACTGGAAATGGTATC
TACAAGTTCACTATTGATACACAAAAACACACTGGTAGCGGGCTTTTCCACACACATGTCTACCGCAATCTCAACGGTAA
AATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAACCTGTTATATCCTTTCAACCCAATTATGCTGCTGCAACTA
CTTATCCAAAAGGTCAATGCACTTGGGGCGCTAAAGCTCTAGCACCTTGGGCTGGAAATTATTGGGGAAATGGTGGCGAT
TGGGCTACTAGTGCCAGACGTGCTGGTTTTAAAACAGGAACAACTCCACAAGTCGGAGCCATTATTTGTTGGACAGATGG
TAGTTACGGACACGTTGGAGTCGTCACTCACGTCGCCTCAAACACACGCATTCAGATTCAAGAGGCAAACTACGCTGGGA
AACAGTACATTGGCAACTTTCGTGGCTGGTTTAATCCCCATGCAGCTGGGCAAGGAGTAGTCAGTTACATTTATCCAAAA
TAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(533-610)

GBS Bsp-like repeat (GBS_Bsp-like)

(438-514)

GBS Bsp-like repeat (GBS_Bsp-like)

(228-298)

GBS Bsp-like repeat (GBS_Bsp-like)

(65-123)

GBS Bsp-like repeat (GBS_Bsp-like)

(331-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

44.19

82.031

0.362

Multiple sequence alignment