Detailed information
Bioinformatically predicted
Overview
| Name | comH | Type | Machinery gene |
| Locus tag | HCW_RS01315 | Genome accession | NC_017737 |
| Coordinates | 254203..255600 (+) | Length | 465 a.a. |
| NCBI ID | WP_014660428.1 | Uniprot ID | I0EKT6 |
| Organism | Helicobacter cetorum MIT 00-7128 | ||
| Function | import of DNA into the periplasm (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 249203..260600
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCW_RS01290 (HCW_01305) | glmS | 249519..251312 (-) | 1794 | WP_014660423.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| HCW_RS01295 (HCW_01310) | - | 251313..251552 (-) | 240 | WP_014660424.1 | DUF2443 family protein | - |
| HCW_RS01300 (HCW_01315) | - | 251594..252136 (-) | 543 | WP_014660425.1 | purine-nucleoside phosphorylase | - |
| HCW_RS01310 (HCW_01325) | dnaA | 252640..253956 (+) | 1317 | WP_043902551.1 | chromosomal replication initiator protein DnaA | - |
| HCW_RS01315 (HCW_01330) | comH | 254203..255600 (+) | 1398 | WP_014660428.1 | hypothetical protein | Machinery gene |
| HCW_RS01325 (HCW_01335) | - | 255785..256537 (+) | 753 | WP_014660429.1 | exodeoxyribonuclease III | - |
| HCW_RS01330 (HCW_01340) | - | 256534..257169 (-) | 636 | WP_014660430.1 | outer membrane protein | - |
| HCW_RS01335 (HCW_01345) | - | 257173..257499 (-) | 327 | WP_014660431.1 | hypothetical protein | - |
| HCW_RS01340 (HCW_01350) | recG | 257632..259485 (+) | 1854 | WP_081478671.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 465 a.a. Molecular weight: 53672.95 Da Isoelectric Point: 8.5864
>NTDB_id=50469 HCW_RS01315 WP_014660428.1 254203..255600(+) (comH) [Helicobacter cetorum MIT 00-7128]
MKNFFYILLFFTNSLKALIIETLEEIKTSPKQGTFKAKIIDSNENHQVLGTYKISSNGKIIFTITHIHTLNTYKPFDEKT
SLQTTLNPKRSIIPKGTQIILSSKEFKNHHINSFNSFSKPSLPKARQNFNPAPSQTYSNFSYLEIPNKLRQINSKNSSSK
TLNTLAEVKHQTNVKEPLKSSLNENLISKPSNKQENIISKQVVAPSLEETTPNEFETIEPKDPNLKEFACGKWVYEDEKL
QAIRPSILKRFDEEKETYTDITPCDYSTTQGKTGKIIMPYTKITQKINEPLEEPETFESTRNFSILKAQSSISKCKGART
KKDGTIRQCYFIDEPLKQSWESQYQITSQLIKVVYERPKQDDQIEPTFYETSELAYTSTRKSEVTHNELNLSDKFMGFVE
VYEGHYLNDILKETSEYKEWVKEHVRLKDGVCEMLEIEELPRAKSVPLSVDNSRVNCIKKGNYIF
MKNFFYILLFFTNSLKALIIETLEEIKTSPKQGTFKAKIIDSNENHQVLGTYKISSNGKIIFTITHIHTLNTYKPFDEKT
SLQTTLNPKRSIIPKGTQIILSSKEFKNHHINSFNSFSKPSLPKARQNFNPAPSQTYSNFSYLEIPNKLRQINSKNSSSK
TLNTLAEVKHQTNVKEPLKSSLNENLISKPSNKQENIISKQVVAPSLEETTPNEFETIEPKDPNLKEFACGKWVYEDEKL
QAIRPSILKRFDEEKETYTDITPCDYSTTQGKTGKIIMPYTKITQKINEPLEEPETFESTRNFSILKAQSSISKCKGART
KKDGTIRQCYFIDEPLKQSWESQYQITSQLIKVVYERPKQDDQIEPTFYETSELAYTSTRKSEVTHNELNLSDKFMGFVE
VYEGHYLNDILKETSEYKEWVKEHVRLKDGVCEMLEIEELPRAKSVPLSVDNSRVNCIKKGNYIF
Nucleotide
Download Length: 1398 bp
>NTDB_id=50469 HCW_RS01315 WP_014660428.1 254203..255600(+) (comH) [Helicobacter cetorum MIT 00-7128]
ATGAAAAATTTTTTTTATATCCTCTTATTCTTTACAAATTCCCTTAAAGCTCTTATCATTGAAACTTTAGAAGAGATTAA
AACTTCACCCAAACAAGGCACTTTCAAAGCTAAAATCATTGATTCTAACGAGAATCATCAAGTCTTAGGAACTTATAAAA
TCTCTTCAAATGGAAAAATTATTTTTACTATCACACATATTCACACTTTAAACACTTATAAACCTTTTGATGAAAAAACC
TCTTTACAAACTACCTTAAATCCTAAACGCTCAATCATTCCCAAAGGCACACAAATCATTTTATCTTCTAAAGAATTTAA
AAATCATCATATAAATTCTTTCAATTCTTTTTCAAAACCATCACTTCCAAAGGCACGCCAAAATTTTAATCCTGCACCTT
CACAAACTTATTCAAACTTTTCTTATTTAGAAATTCCTAATAAATTACGCCAAATAAACTCTAAAAATAGCTCTTCTAAG
ACTTTAAACACTTTAGCTGAAGTCAAACATCAAACTAATGTTAAAGAGCCACTAAAAAGCTCTTTAAATGAAAATCTTAT
TTCTAAACCCTCAAATAAACAAGAAAATATCATATCAAAGCAGGTTGTTGCACCCTCTTTGGAAGAAACAACACCAAATG
AATTTGAAACTATAGAGCCAAAAGACCCTAACTTAAAAGAATTTGCGTGCGGAAAGTGGGTTTATGAAGATGAAAAATTG
CAAGCCATTCGCCCTAGCATTTTAAAACGCTTTGATGAAGAAAAAGAAACTTACACTGATATTACTCCTTGTGATTACAG
CACCACTCAGGGTAAAACAGGCAAGATTATCATGCCTTATACAAAGATTACTCAAAAAATCAATGAGCCTTTAGAAGAGC
CAGAAACTTTTGAAAGCACTCGTAATTTTTCTATTTTAAAAGCACAAAGCTCTATTAGTAAGTGTAAGGGAGCTAGAACT
AAAAAAGATGGCACAATTAGACAATGCTATTTTATAGATGAGCCTTTAAAACAAAGCTGGGAAAGCCAATACCAAATCAC
TTCGCAACTTATCAAGGTTGTTTATGAACGCCCCAAACAAGATGACCAAATAGAGCCAACTTTCTATGAAACAAGCGAAT
TAGCTTACACTTCCACACGAAAAAGCGAAGTAACGCATAATGAATTGAATTTGAGCGATAAATTTATGGGGTTTGTAGAA
GTGTATGAGGGGCATTATTTAAACGATATTTTAAAAGAAACTAGCGAATACAAAGAATGGGTTAAAGAGCATGTGCGTTT
AAAAGATGGGGTATGTGAAATGTTAGAAATAGAAGAACTTCCTAGGGCTAAAAGTGTTCCTTTGAGCGTGGATAATTCTC
GTGTTAATTGTATTAAAAAAGGGAATTATATTTTTTAA
ATGAAAAATTTTTTTTATATCCTCTTATTCTTTACAAATTCCCTTAAAGCTCTTATCATTGAAACTTTAGAAGAGATTAA
AACTTCACCCAAACAAGGCACTTTCAAAGCTAAAATCATTGATTCTAACGAGAATCATCAAGTCTTAGGAACTTATAAAA
TCTCTTCAAATGGAAAAATTATTTTTACTATCACACATATTCACACTTTAAACACTTATAAACCTTTTGATGAAAAAACC
TCTTTACAAACTACCTTAAATCCTAAACGCTCAATCATTCCCAAAGGCACACAAATCATTTTATCTTCTAAAGAATTTAA
AAATCATCATATAAATTCTTTCAATTCTTTTTCAAAACCATCACTTCCAAAGGCACGCCAAAATTTTAATCCTGCACCTT
CACAAACTTATTCAAACTTTTCTTATTTAGAAATTCCTAATAAATTACGCCAAATAAACTCTAAAAATAGCTCTTCTAAG
ACTTTAAACACTTTAGCTGAAGTCAAACATCAAACTAATGTTAAAGAGCCACTAAAAAGCTCTTTAAATGAAAATCTTAT
TTCTAAACCCTCAAATAAACAAGAAAATATCATATCAAAGCAGGTTGTTGCACCCTCTTTGGAAGAAACAACACCAAATG
AATTTGAAACTATAGAGCCAAAAGACCCTAACTTAAAAGAATTTGCGTGCGGAAAGTGGGTTTATGAAGATGAAAAATTG
CAAGCCATTCGCCCTAGCATTTTAAAACGCTTTGATGAAGAAAAAGAAACTTACACTGATATTACTCCTTGTGATTACAG
CACCACTCAGGGTAAAACAGGCAAGATTATCATGCCTTATACAAAGATTACTCAAAAAATCAATGAGCCTTTAGAAGAGC
CAGAAACTTTTGAAAGCACTCGTAATTTTTCTATTTTAAAAGCACAAAGCTCTATTAGTAAGTGTAAGGGAGCTAGAACT
AAAAAAGATGGCACAATTAGACAATGCTATTTTATAGATGAGCCTTTAAAACAAAGCTGGGAAAGCCAATACCAAATCAC
TTCGCAACTTATCAAGGTTGTTTATGAACGCCCCAAACAAGATGACCAAATAGAGCCAACTTTCTATGAAACAAGCGAAT
TAGCTTACACTTCCACACGAAAAAGCGAAGTAACGCATAATGAATTGAATTTGAGCGATAAATTTATGGGGTTTGTAGAA
GTGTATGAGGGGCATTATTTAAACGATATTTTAAAAGAAACTAGCGAATACAAAGAATGGGTTAAAGAGCATGTGCGTTT
AAAAGATGGGGTATGTGAAATGTTAGAAATAGAAGAACTTCCTAGGGCTAAAAGTGTTCCTTTGAGCGTGGATAATTCTC
GTGTTAATTGTATTAAAAAAGGGAATTATATTTTTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comH | Helicobacter pylori 26695 |
57.7 |
100 |
0.604 |