Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SII_RS00210 Genome accession   NC_022237
Coordinates   31361..32134 (+) Length   257 a.a.
NCBI ID   WP_020998144.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26361..37134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS00190 (SII_0039) mreD 27139..27639 (+) 501 WP_020998142.1 rod shape-determining protein MreD -
  SII_RS00195 (SII_0040) pcsB 27749..28930 (+) 1182 WP_003077627.1 peptidoglycan hydrolase PcsB -
  SII_RS00200 (SII_0041) - 29064..30032 (+) 969 WP_003075138.1 ribose-phosphate diphosphokinase -
  SII_RS00205 (SII_0042) - 30196..31383 (+) 1188 WP_020998143.1 pyridoxal phosphate-dependent aminotransferase -
  SII_RS00210 (SII_0043) recO 31361..32134 (+) 774 WP_020998144.1 DNA repair protein RecO Machinery gene
  SII_RS00215 (SII_0044) plsX 32131..33129 (+) 999 WP_020998145.1 phosphate acyltransferase PlsX -
  SII_RS00220 (SII_0045) - 33126..33371 (+) 246 WP_006270090.1 acyl carrier protein -
  SII_RS00225 (SII_0046) purC 33530..34237 (+) 708 WP_020998146.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30081.63 Da        Isoelectric Point: 5.8534

>NTDB_id=50468 SII_RS00210 WP_020998144.1 31361..32134(+) (recO) [Streptococcus intermedius C270]
MLKSITSKGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVRNSKLSPVIQPLVVANFLMKVNDDGLSYIDDYQEVTVFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFAFLQKMLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRIG
LPFDFSFTYNGVLCPEHYSKDERRSHLEPNILYLLDQFQAVQFSELKTISLNSELKYQLRKVIDQIYEEYVGIHLKSKKF
IDSLEDWGKILNNKELK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=50468 SII_RS00210 WP_020998144.1 31361..32134(+) (recO) [Streptococcus intermedius C270]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAACCGTAATTTTCGTGAAGATGATAAGCTAGTTAAAATTTT
CACAGAACAAGCTGGCAAGAGGATGTTTTTCGTGAAACACGTTAGAAATTCTAAGTTAAGTCCAGTTATTCAACCTCTGG
TAGTCGCTAATTTTTTGATGAAGGTAAATGATGACGGTTTGAGCTATATTGATGATTATCAAGAGGTTACCGTTTTCCAG
CATATCAACCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTAGCGGATGCTAGTATTCAGGATAACGA
AATAGACTCTGCTCTCTTTGCTTTTTTGCAAAAAATGTTAGAATTGATGGAGCAAGGTTTGGATTACGAAGTGTTGACCA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGCGTTTCTTTGAATTTTCATGAGTGTTGTTTTTGCCATCGAATAGGG
CTACCGTTTGATTTTTCTTTTACCTATAATGGCGTTTTATGTCCAGAACATTATAGCAAAGATGAGCGACGGAGTCATTT
GGAACCCAATATTCTTTATTTATTAGACCAATTTCAAGCAGTTCAATTTAGTGAACTGAAAACAATTTCGTTAAATTCTG
AACTAAAATATCAATTGCGAAAAGTAATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAATCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAAAAATTTTAAATAACAAGGAGTTGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-74)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

72.941

99.222

0.724

Multiple sequence alignment