Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   IR208_RS12905 Genome accession   NZ_CP064767
Coordinates   2661784..2662578 (-) Length   264 a.a.
NCBI ID   WP_071452050.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain BC01     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2656784..2667578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR208_RS12875 (IR208_12875) - 2657355..2658467 (-) 1113 Protein_2491 IS3 family transposase -
  IR208_RS12880 (IR208_12880) - 2658550..2658774 (-) 225 WP_071452045.1 ATP-binding cassette domain-containing protein -
  IR208_RS12885 (IR208_12885) mutY 2658877..2659968 (-) 1092 WP_071452046.1 A/G-specific adenine glycosylase -
  IR208_RS12890 (IR208_12890) - 2660148..2661128 (+) 981 WP_071452047.1 metal-dependent hydrolase -
  IR208_RS12895 (IR208_12895) - 2661215..2661373 (+) 159 WP_071452048.1 small, acid-soluble spore protein K -
  IR208_RS12900 (IR208_12900) - 2661464..2661781 (-) 318 WP_071452049.1 YfhH family protein -
  IR208_RS12905 (IR208_12905) recX 2661784..2662578 (-) 795 WP_071452050.1 recombination regulator RecX Regulator
  IR208_RS12910 (IR208_12910) - 2662666..2662788 (+) 123 WP_073193833.1 YfhE family protein -
  IR208_RS12915 (IR208_12915) - 2662869..2663051 (+) 183 WP_017552868.1 YfhD family protein -
  IR208_RS12920 (IR208_12920) trpA 2663299..2664090 (-) 792 WP_014097355.1 tryptophan synthase subunit alpha -
  IR208_RS12925 (IR208_12925) - 2664083..2664229 (-) 147 WP_195854852.1 hypothetical protein -
  IR208_RS12930 (IR208_12930) trpB 2664222..2665427 (-) 1206 WP_071452051.1 tryptophan synthase subunit beta -
  IR208_RS12935 (IR208_12935) trpCF 2665405..2666829 (-) 1425 WP_071452052.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30634.17 Da        Isoelectric Point: 8.2739

>NTDB_id=504594 IR208_RS12905 WP_071452050.1 2661784..2662578(-) (recX) [Heyndrickxia coagulans strain BC01]
MPVITKISVQKNNKERYNIFLDGKYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVVRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVINRELQQKGIAPELIEKALEIFDADQQVEH
ARALAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAALHVEKDEEAEWEALLQHAEKAKRKYGKFSGSAYRQK
MKQFLYRKGFPVDLIDRYLREEGD

Nucleotide


Download         Length: 795 bp        

>NTDB_id=504594 IR208_RS12905 WP_071452050.1 2661784..2662578(-) (recX) [Heyndrickxia coagulans strain BC01]
GTGCCTGTCATTACAAAAATCTCGGTTCAAAAAAACAATAAAGAACGTTACAATATTTTTCTTGACGGAAAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAGGGGAAAGAATTGGATGAGCTTGATATTGAAGCAATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCATTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCGTCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGGAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACCCATAAAGGGCCTGTTGTCATTAACAGGG
AACTTCAGCAAAAAGGCATTGCACCAGAGCTGATCGAAAAAGCGCTTGAAATTTTTGATGCTGATCAGCAAGTGGAACAT
GCCCGTGCCCTTGCAGAAAAACTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAACAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCACTTCATGTTGAAAAGGATGAAGAAGCAG
AGTGGGAAGCCCTTCTTCAGCATGCGGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATCCGCCTACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGGGAAGAGGGGGATTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.471

99.621

0.523