Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IR208_RS09825 Genome accession   NZ_CP064767
Coordinates   2036739..2039102 (-) Length   787 a.a.
NCBI ID   WP_071451949.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain BC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2031739..2044102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR208_RS09800 (IR208_09800) - 2032017..2032667 (-) 651 WP_014097896.1 HlyD family efflux transporter periplasmic adaptor subunit -
  IR208_RS09805 (IR208_09805) - 2032675..2033115 (-) 441 WP_014097895.1 MarR family winged helix-turn-helix transcriptional regulator -
  IR208_RS09810 (IR208_09810) dtd 2033362..2033802 (-) 441 WP_014097894.1 D-aminoacyl-tRNA deacylase -
  IR208_RS09815 (IR208_09815) - 2033816..2036005 (-) 2190 WP_195854849.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IR208_RS09820 (IR208_09820) - 2036227..2036748 (-) 522 WP_014097892.1 adenine phosphoribosyltransferase -
  IR208_RS09825 (IR208_09825) recJ 2036739..2039102 (-) 2364 WP_071451949.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IR208_RS09830 (IR208_09830) secDF 2039191..2041455 (-) 2265 WP_017551047.1 protein translocase subunit SecDF -
  IR208_RS09835 (IR208_09835) - 2041601..2041921 (-) 321 WP_017551048.1 post-transcriptional regulator -
  IR208_RS09840 (IR208_09840) spoVB 2042025..2043569 (+) 1545 WP_017551049.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88034.05 Da        Isoelectric Point: 5.6715

>NTDB_id=504586 IR208_RS09825 WP_071451949.1 2036739..2039102(-) (recJ) [Heyndrickxia coagulans strain BC01]
MLQSRTRWRVPEMEPKAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGLAYYDPFLLHDMEKAAARIREAIKRE
EPVLVFGDYDADGVTSTAIMMAVLNDLGAHAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GITLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEDLAAIGTVADLVPLLNENRLI
AINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTEDTEEAGMLAETIDGLNKE
RQKIVNDMTNEAIELVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAECPQIRAIGADGKHLKLTLSKNGTTLDGIGFGLGNLAPHISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWARYVPEEDQAFVVFQKETLRNLPLPDFSVRLVSVATMEEARAFDPSNKNIVFLDLPKGPRM
MAALLEGGSPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKQHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESLTYQKKLAQYQMEKDLLYSSFQELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=504586 IR208_RS09825 WP_071451949.1 2036739..2039102(-) (recJ) [Heyndrickxia coagulans strain BC01]
ATGCTGCAGTCAAGAACAAGATGGCGGGTGCCGGAAATGGAACCAAAAGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGCTAGCGTATTATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCGGCCCGCATCCGCGAAGCGATTAAAAGAGAA
GAACCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGCACTGCCATCATGATGGCCGTTTTAAACGATCT
TGGCGCCCATGCTGAATTTTACATCCCGGACCGGTTTAAAGAAGGGTACGGGCCAAATGAAGCGGCTTTCCGGCGGGCGG
CTGAAGAGGGTTTTCAGCTGATCATTACCGTTGATACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTC
GGGATCACGCTCATTATTACGGACCATCACGAACCTGGGCCGGTATTGCCGGAAGCTTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAGCTTGAAGATTTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTAAACGAAAACCGGCTGATT
GCCATAAACGGCATCAAACGGCTGAGAACGACAAAGCGGGCGGGGCTAGTGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATCAATGAAGAAACCATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCGGCCGGGCGCCTGCAACATGCGGCAC
CGGCAGCGGAACTGCTAATGACCGAAGACACAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGCCTCAATAAAGAA
CGGCAAAAAATCGTAAACGACATGACAAATGAAGCAATCGAACTGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGCTGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGACCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGCATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGAGGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGACGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCGGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGACGGGGCCGAATGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GACGCTTTCTAAAAACGGCACAACGCTCGATGGGATCGGCTTCGGGCTCGGGAATCTTGCCCCGCATATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAGCTGTCCATCAACGAATGGAACAATATCCGTAAGCCGCAAATGATGGTGAAGGATATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGCACGGTACGTCCCGGAAGAAGA
CCAGGCTTTTGTTGTCTTCCAAAAAGAAACATTGCGGAACCTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGTCGGTTG
CGACAATGGAAGAGGCAAGGGCATTTGATCCTTCAAATAAAAACATTGTGTTTCTGGATCTTCCGAAAGGCCCGCGGATG
ATGGCGGCACTGCTTGAGGGCGGTTCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTCCCGACACGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTAAAGCAGCACGGGG
ATGAGCTGGCGGCTTATCGCGGCTGGTCGAGAAATACCATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTCTTACGTATCAAAAAAA
ACTAGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCAGGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(454-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.605

100

0.526