Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IR208_RS08870 Genome accession   NZ_CP064767
Coordinates   1861711..1863414 (-) Length   567 a.a.
NCBI ID   WP_014098069.1    Uniprot ID   A0AAU7WM09
Organism   Heyndrickxia coagulans strain BC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856711..1868414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR208_RS08850 (IR208_08850) - 1858184..1858426 (+) 243 WP_026683288.1 DUF2627 domain-containing protein -
  IR208_RS08855 (IR208_08855) - 1858436..1859179 (-) 744 WP_014098073.1 glycerophosphodiester phosphodiesterase -
  IR208_RS08860 (IR208_08860) spo0A 1859298..1860083 (-) 786 WP_014098072.1 sporulation transcription factor Spo0A -
  IR208_RS08865 (IR208_08865) spoIVB 1860249..1861532 (-) 1284 WP_071451929.1 SpoIVB peptidase -
  IR208_RS08870 (IR208_08870) recN 1861711..1863414 (-) 1704 WP_014098069.1 DNA repair protein RecN Machinery gene
  IR208_RS08875 (IR208_08875) argR 1863432..1863881 (-) 450 WP_014098068.1 transcriptional regulator ArgR -
  IR208_RS08880 (IR208_08880) - 1864051..1864875 (-) 825 WP_014098067.1 TlyA family RNA methyltransferase -
  IR208_RS08885 (IR208_08885) dxs 1864876..1866777 (-) 1902 WP_014098066.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IR208_RS08890 (IR208_08890) - 1866926..1867795 (-) 870 WP_017550507.1 polyprenyl synthetase family protein -
  IR208_RS08895 (IR208_08895) - 1867798..1868025 (-) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64645.56 Da        Isoelectric Point: 4.8352

>NTDB_id=504581 IR208_RS08870 WP_014098069.1 1861711..1863414(-) (recN) [Heyndrickxia coagulans strain BC01]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMDRA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNTGYEALAGE
QHGLDWLSLAMSHLETAAEVDGELSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSSI
EEILEYGSKIEEEIESIVNRDHHVELLEKELQTVKRDLYLEAKQLSDLRKKWAEKLTKNIHSELKQLYMDKTKFEVRFLA
AADDYYEADDIPFRRDGLDQVEFYISTNPGEPLKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYRISVHSQVLCITHLPQVAAMADTHLLIMKETEKERTRTKVKPLGQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=504581 IR208_RS08870 WP_014098069.1 1861711..1863414(-) (recN) [Heyndrickxia coagulans strain BC01]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCATTAACGCTTTCATTTGAAGCCGGGCTGACCGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCCATCCAGCTTCTAACAGGCGGGAGAGGGTCATCGGAGT
TCGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGCTTATTTCTGGTCGAGGACGGTCATCCGTGCATGGATCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTCATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTTTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCACTGCTTGACCAGTACGGGCAAAGTGAGATTGAAACGGCTCTCCTT
GATTACGAAAAATTGTATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTCGC
CCAGCGCCTTGACCTCATCCAATTCCAGCATGAGGAAATCCAAAACGCCGGACTGAGGCTGCATGAAGACGAGGAATTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAATACGGGGTATGAAGCGCTTGCCGGGGAA
CAGCATGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAACCGCGGCTGAAGTGGATGGCGAGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCAATCCGTTCCCGGCTTGACGGACTTGAAT
TTGACCCGGAACGGCTTAACGTAATTGAAGCGCGGCTGAATGAGATCAACCAGTTAAAACGAAAATATGGTAGCTCGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATCGAATCGATCGTAAACCGTGACCATCATGTGGAGCTTCT
AGAAAAAGAACTGCAAACGGTAAAACGCGATCTGTATTTGGAAGCCAAGCAGCTCAGCGATTTACGCAAAAAATGGGCGG
AAAAGCTGACTAAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
GCTGCTGATGATTATTATGAGGCGGATGACATTCCGTTCCGGCGCGACGGGCTCGACCAGGTTGAATTTTACATTTCCAC
CAATCCGGGCGAACCGCTAAAACCGCTCGCAAAAACCGCTTCGGGCGGAGAATTGTCGCGGATTATGCTGGCATTAAAAA
CGATATTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGATACCGGCGTAAGCGGCCGCGTTGCGCAG
GCGATTGCGGAGAAAATTTACCGCATTTCGGTCCATTCGCAAGTCCTCTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGATACACATCTGTTGATCATGAAAGAGACTGAAAAGGAGAGAACGCGGACAAAAGTCAAGCCTTTAGGTCAGGAAG
AAAAAATTAAAGAAATCGGCCGTATGATTTCAGGCGTTGAAATGACAGAGTTGACAAGACAGCATGCGAAAGAGCTGCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.162

100

0.598