Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IR208_RS04735 Genome accession   NZ_CP064767
Coordinates   1045265..1047079 (+) Length   604 a.a.
NCBI ID   WP_014095725.1    Uniprot ID   A0AAU7WDP7
Organism   Heyndrickxia coagulans strain BC01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1040265..1052079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR208_RS04715 (IR208_04715) - 1041086..1042027 (+) 942 WP_013858788.1 ABC transporter ATP-binding protein -
  IR208_RS04720 (IR208_04720) spxA 1042307..1042702 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  IR208_RS04725 (IR208_04725) mecA 1043062..1043721 (+) 660 WP_026683767.1 adaptor protein MecA -
  IR208_RS04730 (IR208_04730) - 1043971..1045197 (+) 1227 WP_260832499.1 competence protein CoiA -
  IR208_RS04735 (IR208_04735) pepF 1045265..1047079 (+) 1815 WP_014095725.1 oligoendopeptidase F Regulator
  IR208_RS04740 (IR208_04740) - 1047471..1047662 (-) 192 WP_017553961.1 hypothetical protein -
  IR208_RS04745 (IR208_04745) - 1047953..1048810 (-) 858 WP_017553962.1 ClpXP adapter SpxH family protein -
  IR208_RS04750 (IR208_04750) - 1048807..1049208 (-) 402 WP_013858794.1 globin -
  IR208_RS04755 (IR208_04755) - 1049647..1050441 (-) 795 WP_071451802.1 lytic transglycosylase domain-containing protein -
  IR208_RS04760 (IR208_04760) - 1050438..1051022 (-) 585 WP_035189769.1 CYTH domain-containing protein -
  IR208_RS04765 (IR208_04765) - 1051159..1051542 (+) 384 WP_071451803.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69499.07 Da        Isoelectric Point: 5.1940

>NTDB_id=504571 IR208_RS04735 WP_014095725.1 1045265..1047079(+) (pepF) [Heyndrickxia coagulans strain BC01]
MENGKKVHALPSRDEVREALTWRLEDIFPSDDDWNKEYQAVKEKLADAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGIDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYEPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALSANHIPEKVYDQLVETVNKHLGLLHRYVALRKKALQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGEEYRSILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYYGTDTAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMTSPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=504571 IR208_RS04735 WP_014095725.1 1045265..1047079(+) (pepF) [Heyndrickxia coagulans strain BC01]
ATGGAAAATGGGAAAAAAGTACACGCGTTGCCAAGCCGGGACGAGGTTCGTGAAGCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGATGACTGGAATAAAGAATACCAAGCAGTAAAAGAAAAGCTGGCCGATGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACAGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATAGACAGCAAAGCAAAAAGCCTTGC
TGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTTTCGATTGAAGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGAGCCGCTGCAATTGTACCGGCACGCATTGGAAGAAATCAATGAGATGCGCCCGCATATTTTATCGAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCAGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTGAACAATGCCGACCT
TGAGTTCCCGACCGTGATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGTTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAGAAATTGTATGCAACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTTGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTTCGGC
AAACCACATTCCTGAAAAAGTGTACGACCAGCTTGTGGAAACGGTGAACAAGCATCTTGGTTTGCTGCATCGGTATGTTG
CACTGCGCAAAAAAGCGCTGCAGCTTGATGAAGTGCATATGTATGATTTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTAACATATGAAAAAGCGAAAGAGATTGTGCTTGACGGCCTCCATCCGCTCGGCGAGGAATACCGGAGCATTTTGCA
ACAGGCGTTTGAAAACCGCTGGATTGATGTGGTGGAAAATAAGGGAAAACGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCTATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCACTATTGAATGACTATCTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTATTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTTTTCCGCCAGACGATGTTTGCTGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGTTGACGGCGGAACTTTTAACAGATGAGTATTATAAGCTGAACCAAAAATACTATGGTACGGATACCGC
CATTGATCAGGAAATCGGGCTAGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTATATCGGCTATTTG
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGACGTCACCCCAACCGGTCGAAGA
TGCGTTAAAAGTTTTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.014

98.013

0.5