Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IR208_RS03785 Genome accession   NZ_CP064767
Coordinates   839428..840813 (+) Length   461 a.a.
NCBI ID   WP_071451763.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain BC01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 834428..845813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR208_RS03770 (IR208_03770) - 835276..835959 (+) 684 WP_026684742.1 response regulator transcription factor -
  IR208_RS03775 (IR208_03775) - 836297..837721 (-) 1425 WP_035182251.1 amino acid permease -
  IR208_RS03780 (IR208_03780) - 838284..839126 (+) 843 WP_014095894.1 DegV family protein -
  IR208_RS03785 (IR208_03785) comFA 839428..840813 (+) 1386 WP_071451763.1 DEAD/DEAH box helicase Machinery gene
  IR208_RS03790 (IR208_03790) - 840806..841513 (+) 708 WP_014095891.1 ComF family protein -
  IR208_RS03795 (IR208_03795) - 841580..841975 (+) 396 WP_013858610.1 TIGR03826 family flagellar region protein -
  IR208_RS03800 (IR208_03800) flgM 842046..842312 (+) 267 WP_014095890.1 flagellar biosynthesis anti-sigma factor FlgM -
  IR208_RS03805 (IR208_03805) - 842325..842795 (+) 471 WP_014095889.1 flagellar protein FlgN -
  IR208_RS03810 (IR208_03810) flgK 842818..844434 (+) 1617 WP_017551636.1 flagellar hook-associated protein FlgK -
  IR208_RS03815 (IR208_03815) flgL 844449..845342 (+) 894 WP_013858614.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51633.98 Da        Isoelectric Point: 9.0549

>NTDB_id=504561 IR208_RS03785 WP_071451763.1 839428..840813(+) (comFA) [Heyndrickxia coagulans strain BC01]
MPSVFSEQLQRHLAGRILFEPEIPFSPELLDQHFKQGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACKPLITWAGPAPAFHSPRHPLHWDGTLSEGQQAASEAVKAAILQKNELLIWAVCGSGKTEIVFKGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDIPIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDVVIVDEVDAFPYTFD
ETLQCAVQKAAKDRCARIYLTATPSETWQLECKTGKRPFVTIPARYHRKPLPVPVFKWAGNWRKKFEKGKLPVPVEAWVK
KRLESGKQALLFLPNIRLMKKAEPVFKQLHPAIESVHAEDPDRKEKVERMRAGKTPLLLTTTILERGVTFPNIDVCVVWA
EDAIFTEAALVQIAGRAGRSADFPSGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=504561 IR208_RS03785 WP_071451763.1 839428..840813(+) (comFA) [Heyndrickxia coagulans strain BC01]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACGCCACCTCGCCGGACGGATCCTGTTCGAACCGGAAATCCCTTTTTCACC
GGAACTGCTTGATCAGCACTTTAAACAAGGCTGGATCCGCGCTGAGCCGGCGATACAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGCGCCCACTGCGGGAAAACGAGCATTTATTGC
CGGAACTGCCTGATGATGGGGCGGGTCACCGCATGCAAGCCGCTTATCACATGGGCAGGCCCTGCGCCCGCATTCCACTC
GCCCAGGCACCCGCTCCATTGGGATGGCACCCTTTCTGAAGGGCAGCAGGCTGCATCCGAAGCGGTTAAAGCAGCCATTC
TTCAAAAAAACGAGCTCTTGATTTGGGCTGTTTGCGGATCAGGGAAGACAGAGATCGTTTTCAAAGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCAACCCCCAGAACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCCGATTGCCGCGCTCTACGGCGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTCATCTCCACTA
CCCACCAGCTGTACCGCTTTGCATCCGCCTTTGATGTCGTGATTGTAGATGAAGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGTGCGCCGTTCAAAAAGCGGCAAAAGACCGCTGCGCCCGCATTTATCTTACCGCAACACCAAGTGAAAC
ATGGCAGCTTGAATGCAAGACAGGTAAGCGCCCGTTTGTCACGATCCCGGCCCGCTATCACCGCAAGCCCCTCCCTGTTC
CTGTATTCAAATGGGCAGGCAACTGGCGAAAAAAGTTTGAGAAAGGCAAGCTCCCGGTTCCGGTTGAAGCATGGGTAAAA
AAGAGGCTTGAATCCGGAAAACAGGCGCTTCTTTTTCTCCCGAACATCCGCCTCATGAAAAAAGCAGAGCCGGTTTTTAA
ACAGCTGCATCCAGCGATTGAATCGGTGCACGCAGAAGACCCGGATCGGAAAGAAAAAGTGGAAAGGATGCGCGCCGGCA
AAACGCCGCTTTTGCTAACAACGACCATTCTTGAACGCGGCGTCACGTTTCCGAATATTGATGTCTGTGTCGTCTGGGCG
GAAGATGCTATCTTTACGGAAGCTGCCCTCGTCCAGATCGCGGGCCGAGCCGGAAGAAGCGCCGATTTCCCAAGTGGGGA
CGTGACGTTTTTCCATTACGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTCTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-420)

Type III restriction enzyme, res subunit (ResIII)

(118-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.89

98.265

0.49
  comFA Latilactobacillus sakei subsp. sakei 23K

38.515

93.492

0.36