Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IR208_RS00565 Genome accession   NZ_CP064767
Coordinates   110217..111587 (+) Length   456 a.a.
NCBI ID   WP_017551240.1    Uniprot ID   A0A8B4BWR1
Organism   Heyndrickxia coagulans strain BC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105217..116587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR208_RS00545 (IR208_00545) - 105516..105977 (+) 462 WP_013858048.1 CtsR family transcriptional regulator -
  IR208_RS00550 (IR208_00550) - 105997..106542 (+) 546 WP_017551242.1 UvrB/UvrC motif-containing protein -
  IR208_RS00555 (IR208_00555) - 106542..107609 (+) 1068 WP_071452222.1 protein arginine kinase -
  IR208_RS00560 (IR208_00560) clpC 107626..110076 (+) 2451 WP_014096528.1 ATP-dependent protease ATP-binding subunit ClpC -
  IR208_RS00565 (IR208_00565) radA 110217..111587 (+) 1371 WP_017551240.1 DNA repair protein RadA Machinery gene
  IR208_RS00570 (IR208_00570) - 111917..113002 (+) 1086 WP_013858053.1 PIN/TRAM domain-containing protein -
  IR208_RS00575 (IR208_00575) ispD 113068..113748 (+) 681 WP_017551237.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IR208_RS00580 (IR208_00580) ispF 113751..114227 (+) 477 WP_019722060.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  IR208_RS00585 (IR208_00585) gltX 114623..116083 (+) 1461 WP_013858056.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49786.28 Da        Isoelectric Point: 7.7437

>NTDB_id=504557 IR208_RS00565 WP_017551240.1 110217..111587(+) (radA) [Heyndrickxia coagulans strain BC01]
MAKKTVKFVCQNCGYESPKWMGKCPQCNQWNQMVEEAEAPKRRGFFLHPEPGNETKAAPITSIESKEEKRTKVDFGELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSSQLAKHGLNVLYISGEESAKQTKLRADRLNIHTDHLYVLPETDLSVIQQA
IDELNPGFVIIDSIQTIYHPEIQSAPGSVSQVRETTAQLMRTAKTKNVAIFIVGHVTKEGSIAGPRVLEHMVDTVLYFEG
ERHNAYRILRAVKNRFGSTNEIAILEMKESGLEEVQNPSEIFLEERTKGAAGSTVVASIEGTRPVLVEIQALLAPTFFNM
PRRMASGIDYNRVTLIMAVLEKRAGLLIQNQDAYLKVAGGLKVDEPAVDLAVAVSVASSFRDKPTNADDCIIGEVGLTGE
VRRVSRIEQRVQEAAKLGFRRAIIPKNNMGGWTPPKEIQVIGVATIQEALKAALGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=504557 IR208_RS00565 WP_017551240.1 110217..111587(+) (radA) [Heyndrickxia coagulans strain BC01]
ATGGCAAAAAAAACCGTGAAGTTTGTTTGCCAGAACTGCGGCTACGAGTCGCCAAAATGGATGGGAAAGTGCCCGCAATG
CAACCAGTGGAACCAGATGGTGGAGGAAGCGGAGGCGCCAAAAAGGAGGGGCTTTTTTTTACATCCTGAGCCCGGAAATG
AAACCAAAGCGGCGCCTATTACGTCTATAGAGTCTAAAGAAGAAAAAAGGACGAAAGTGGATTTTGGCGAGCTGAATCGT
GTCCTCGGAGGCGGCATTGTTGCCGGGTCACTTGTTTTGATCGGCGGGGATCCCGGGATCGGCAAATCAACCCTGCTTTT
GCAAGTGTCATCACAACTGGCAAAGCACGGGTTAAATGTACTGTATATCTCCGGGGAGGAATCGGCGAAACAGACGAAAT
TAAGGGCAGACCGGTTAAACATCCATACCGACCATCTTTATGTGCTGCCGGAAACGGACCTTTCCGTGATCCAGCAGGCG
ATAGATGAACTGAACCCCGGCTTTGTTATCATTGATTCCATCCAGACGATTTACCATCCGGAAATCCAGTCTGCGCCGGG
CAGTGTGTCGCAAGTGAGGGAAACGACTGCACAGCTGATGCGGACGGCAAAAACAAAAAATGTGGCCATCTTCATTGTCG
GCCACGTGACAAAAGAAGGCTCCATTGCCGGCCCGCGCGTGCTTGAACATATGGTGGATACGGTCCTGTATTTTGAAGGT
GAACGCCATAATGCCTACCGGATATTAAGGGCGGTCAAAAACCGCTTTGGCTCGACCAATGAAATTGCGATTTTGGAAAT
GAAAGAATCCGGTTTGGAAGAAGTCCAGAACCCTTCCGAAATTTTTCTGGAAGAACGGACAAAAGGTGCAGCCGGTTCTA
CCGTGGTTGCTTCCATTGAGGGGACGCGCCCGGTGCTTGTCGAGATCCAGGCGCTTTTGGCTCCGACGTTTTTCAATATG
CCGCGGCGGATGGCATCCGGGATTGATTATAACCGTGTCACGCTGATTATGGCGGTGCTTGAAAAACGGGCCGGCCTTTT
GATTCAGAACCAGGATGCATATTTAAAAGTTGCCGGCGGCCTGAAAGTGGATGAACCGGCAGTGGATTTGGCAGTTGCCG
TCAGCGTGGCATCCAGTTTCCGCGACAAGCCGACAAATGCGGATGACTGCATTATCGGAGAAGTCGGGCTGACGGGGGAA
GTCAGGCGGGTGTCCCGCATTGAGCAGCGCGTCCAGGAAGCGGCAAAGCTCGGTTTCCGGCGGGCGATCATTCCGAAAAA
TAATATGGGTGGGTGGACGCCGCCAAAGGAGATTCAAGTGATCGGCGTCGCTACCATCCAGGAAGCTTTAAAAGCGGCAC
TCGGAGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BWR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.242

100

0.717
  radA Streptococcus mitis NCTC 12261

63.415

98.904

0.627
  radA Streptococcus mitis SK321

63.193

98.904

0.625
  radA Streptococcus pneumoniae Rx1

63.193

98.904

0.625
  radA Streptococcus pneumoniae D39

63.193

98.904

0.625
  radA Streptococcus pneumoniae R6

63.193

98.904

0.625
  radA Streptococcus pneumoniae TIGR4

63.193

98.904

0.625