Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IT773_RS09690 Genome accession   NZ_CP064761
Coordinates   1994167..1995537 (-) Length   456 a.a.
NCBI ID   WP_195701281.1    Uniprot ID   -
Organism   Companilactobacillus futsaii strain Chongqingii CQ16Z1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989167..2000537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT773_RS09670 - 1989488..1989901 (-) 414 WP_057812662.1 Mini-ribonuclease 3 -
  IT773_RS09675 cysS 1989894..1991300 (-) 1407 WP_195701280.1 cysteine--tRNA ligase -
  IT773_RS09680 gltX 1991386..1992882 (-) 1497 WP_057812666.1 glutamate--tRNA ligase -
  IT773_RS09685 - 1992863..1994152 (-) 1290 WP_057812668.1 PIN/TRAM domain-containing protein -
  IT773_RS09690 radA 1994167..1995537 (-) 1371 WP_195701281.1 DNA repair protein RadA Machinery gene
  IT773_RS09695 - 1995557..1996099 (-) 543 WP_057812670.1 dUTP diphosphatase -
  IT773_RS09700 - 1996231..1996533 (+) 303 WP_057812672.1 GNAT family N-acetyltransferase -
  IT773_RS09705 rpiA 1996534..1997223 (+) 690 WP_057812674.1 ribose-5-phosphate isomerase RpiA -
  IT773_RS09710 - 1997248..1998591 (+) 1344 WP_057812676.1 aminopeptidase C -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49906.28 Da        Isoelectric Point: 7.3013

>NTDB_id=504548 IT773_RS09690 WP_195701281.1 1994167..1995537(-) (radA) [Companilactobacillus futsaii strain Chongqingii CQ16Z1]
MAKAKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVEQTTAKASATPSRRVSDLESKPVKIGDVSFEREPRIKTDMDEL
NRVLGGGIVPESLILIGGDPGIGKSTLLTQVSGQLQKTGGKVLYVSGEESASQIKMRADRLGIKGDNLYIYPQTDMSYIR
QTIDDMKPDFLIIDSVQTMDEPEISSAVGSISQIREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEERLADANGSAVVVSMEGTRPILVEIQSLITPTVF
GNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNTGIPGTDCFVGEVGLT
GEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKNNKIQIIGVSTVSDAMNKIF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=504548 IT773_RS09690 WP_195701281.1 1994167..1995537(-) (radA) [Companilactobacillus futsaii strain Chongqingii CQ16Z1]
TTGGCTAAAGCTAAAACAAAATTTGTATGTCAAAATTGTGGTTACGTTTCCCCAAAGTACTTAGGTCGCTGTCCTAACTG
TGGCGTGTGGAATCAAATGGTCGAAGAAGTTGAACAAACAACCGCCAAAGCTAGTGCTACACCTAGTCGTCGTGTCAGTG
ATTTGGAGTCTAAACCCGTTAAAATTGGGGATGTTTCCTTTGAAAGAGAACCTCGAATCAAGACTGATATGGACGAATTG
AATCGAGTTCTCGGTGGTGGAATCGTACCAGAGTCTTTGATTTTAATCGGTGGAGATCCGGGAATCGGGAAGTCAACGCT
TTTGACCCAAGTTTCCGGACAACTGCAAAAGACCGGTGGCAAGGTTTTGTACGTTTCTGGTGAAGAGAGTGCTTCACAAA
TTAAAATGCGAGCTGACCGGTTAGGCATCAAGGGCGATAATTTATACATTTATCCACAGACTGATATGAGTTATATTCGT
CAAACCATCGATGATATGAAACCAGATTTTCTCATTATTGATTCTGTACAGACGATGGATGAGCCGGAGATTTCTTCTGC
TGTTGGTAGCATTTCCCAAATTCGTGAAGTAACAGCTGAACTGATGAACATTGCTAAACAACAAAACATTACCGTCTTTG
TTGTGGGGCATGTAACTAAAGGTGGTGCCATTGCCGGTCCAAAGATTTTGGAACACATGGTAGATACAGTTTTGTATTTT
GAAGGTGACACTCATCACAGTTATCGGATTTTACGTTCAGTTAAAAATCGTTTTGGTTCAACTAACGAAATTGGTATTTT
TGAAATGCGGACTAAAGGTTTAGTTGAAGTGGCCAACCCATCTGAGATTTTCTTAGAAGAACGTTTAGCCGATGCTAATG
GGTCTGCGGTAGTAGTCTCAATGGAAGGAACCAGACCAATTTTGGTTGAAATTCAATCTTTGATCACACCAACAGTATTT
GGCAATGCTAAGAGAACCGCAACTGGCTTAGATCATAATCGGGTTTCAGTTATTATGGCGGTACTGGAAAAACGTGGTAA
TTTGATGCTTCAAAACCAAGATGCCTATTTGAAGTCAACTGGTGGCGTAAAATTGGATGAGCCTGCAATCGATTTAGCCT
TAGCGATGTCAATCGCTTCTAGTTATAAGAATACGGGGATTCCTGGCACTGATTGCTTCGTTGGTGAAGTCGGTTTGACT
GGTGAAGTTAGACGAGTAAATCGCATCGATCAACGGGTTAATGAAGCAGAAAAACTCGGTTTCAAGCGAATCTTTATTCC
TAAAAATAATCTTGGTGACTGGTCCAAAAATAATAAGATTCAAATCATCGGTGTCAGTACCGTGTCAGATGCTATGAACA
AAATATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-430)

AAA domain (AAA_25)

(58-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

64.474

100

0.645
  radA Streptococcus pneumoniae Rx1

64.474

100

0.645
  radA Streptococcus pneumoniae D39

64.474

100

0.645
  radA Streptococcus pneumoniae R6

64.474

100

0.645
  radA Streptococcus pneumoniae TIGR4

64.474

100

0.645
  radA Streptococcus mitis SK321

64.474

100

0.645
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

99.342

0.627